HHsearch alignment for GI: 254780606 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.78 E-value=0.028 Score=34.64 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=76.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-------------C-CCCCCCCEEE--
Q ss_conf 21120114846997078753447999999999985680110799972342100-------------0-1257752000--
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-------------S-VYDGIPHLLT-- 468 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-------------~-~~~~~ph~~~-- 468 (744)
T Consensus 23 isl~i~~Ge~~~iiG~sGsGKTTll~-~i~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~-~~L~~~l 97 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLN-ILGGLD---RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQS-FNLLPDL 97 (218)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCC-CCCCCCC
T ss_conf 28998699899999999986999999-996699---999649999999988799899999865047898667-5215564
Q ss_pred EEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 04444178768999999866769-99999807786799---------999886420267766654323386799984456
Q gi|254780606|r 469 PVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
T Consensus 98 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~LSGG~kQRv~iAraL---------~~~P~-llllDEP 167 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL---------ANDPK-IILADEP 167 (218)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------HCCCC-EEEEECC
T ss_conf 3999999999984999899999999876767937887388763899999999999998---------55999-9998188
Q ss_pred HH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 87-67531035899999999964201358999851654444146788505630572
Q gi|254780606|r 539 AD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 539 a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
T Consensus 168 Ts~LD~~~---~~~i~~~l~~l~~~~~~tii~itHd~~--~~------~~aDrv~~ 212 (218)
T cd03255 168 TGNLDSET---GKEVMELLRELNKEAGTTIVVVTHDPE--LA------EYADRIIE 212 (218)
T ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCEEEEECCCHH--HH------HHCCEEEE
T ss_conf 87689999---999999999999962989999896889--99------86998999