HHsearch alignment for GI: 254780606 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.73 E-value=0.068 Score=31.99 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=19.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 21120114846997078753447999999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
T Consensus 14 Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l 42 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 48998599899998789960989836166