>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=93.97 E-value=0.29 Score=27.63 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=69.6 Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCCC--CEEC-CCCCCCCEEE--EEEECHHHHH Q ss_conf 112011484699707875344799999999998568011079997--2342--1000-1257752000--0444417876 Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPKM--LELS-VYDGIPHLLT--PVVTNPKKAV 478 (744) Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k~--~~~~-~~~~~ph~~~--~v~~~~~~~~ 478 (744) T Consensus 24 sl~i~~Ge~~~iiGpsGsGKSTLl~-~i~Gl~---~p~~G~I~~~G~~i~~~~~~ig~vfQ~-~~L~p~~tv~eni~~~l 98 (220) T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLR-IIAGLE---RPTSGEVLVDGEPVTGPGPDRGYVFQQ-DALLPWLTVLDNVALGL 98 (220) T ss_pred EEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCCCEEEEECC-CCCCCCCCHHHHHHHHH T ss_conf 8898799899999999957999999-997599---988738999999678889887999248-85377887999998899 Q ss_pred HHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH-HHHHHCCH Q ss_conf 8999999866769-99999807786799---------9998864202677666543233867999844568-76753103 Q gi|254780606|r 479 MALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA-DLMMVAGK 547 (744) Q Consensus 479 ~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a-~l~~~~~~ 547 (744) T Consensus 99 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL---------~~~P~-llllDEPts~LD~~~~~ 168 (220) T cd03293 99 ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL---------AVDPD-VLLLDEPFSALDALTRE 168 (220) T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCCCHHHHH T ss_conf 865999899999999999987895476189312999999999999998---------66999-99980887656999999 Q ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC Q ss_conf 5899999999964201358999851654 Q gi|254780606|r 548 EIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744) Q Consensus 548 ~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744) T Consensus 169 ---~i~~~l~~l~~~~g~tii~vTHdl~ 193 (220) T cd03293 169 ---QLQEELLDIWRETGKTVLLVTHDID 193 (220) T ss_pred ---HHHHHHHHHHHHCCCEEEEECCCHH T ss_conf ---9999999999851999999888899

HHsearch alignment for GI: 254780606 and conserved domain: cd03293