>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.00 E-value=0.047 Score=33.09 Aligned_cols=146 Identities=19% Similarity=0.273 Sum_probs=69.9 Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCC---------CEECCCCCCCCEEEEEEECHHH Q ss_conf 201148469970787534479999999999856801107999--72342---------1000125775200004444178 Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKM---------LELSVYDGIPHLLTPVVTNPKK 476 (744) Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~---------~~~~~~~~~ph~~~~v~~~~~~ 476 (744) T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~-li~Gl~---~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~lt--V~eN--- 90 (211) T cd03298 20 TFAQGEITAIVGPSGSGKSTLLN-LIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLT--VEQN--- 90 (211) T ss_pred EECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHH--- T ss_conf 98899899999999955999999-997699---98852999999999999988986799953886689994--9999--- Q ss_pred HHHHHH---HHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHH Q ss_conf 768999---999866769-99999807786799---------99988642026776665432338679998445-68767 Q gi|254780606|r 477 AVMALK---WAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLM 542 (744) Q Consensus 477 ~~~~l~---~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~ 542 (744) T Consensus 91 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL~---------~~P~-ilLlDEPts~LD 160 (211) T cd03298 91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV---------RDKP-VLLLDEPFAALD 160 (211) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH---------CCCC-EEEECCCCCCCC T ss_conf 875886468882999999999998769987872894558989999999999986---------5999-999718876559 Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC Q ss_conf 531035899999999964201358999851654 Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744) Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744) T Consensus 161 ~~~~~---~l~~~l~~l~~~~~~Tvi~vTHd~~ 190 (211) T cd03298 161 PALRA---EMLDLVLDLHAETKMTVLMVTHQPE 190 (211) T ss_pred HHHHH---HHHHHHHHHHHHHCCEEEEECCCHH T ss_conf 89999---9999999999974998999988999

HHsearch alignment for GI: 254780606 and conserved domain: cd03298