HHsearch alignment for GI: 254780606 and conserved domain: cd03301
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.71 E-value=0.014 Score=36.64 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=79.0
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEECH
Q ss_conf 1120114846997078753447999999999985680110799972-------34----210001257752000044441
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTNP 474 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~~ 474 (744)
T Consensus 20 sl~v~~Ge~~~i~GpSG~GKSTlLr~-iaGl~---~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~lt--V~eNI 93 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRM-IAGLE---EPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT--VYDNI 93 (213)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHHH
T ss_conf 77986998999999998809999999-97699---99863999999999999976788789945876465470--99999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHH
Q ss_conf 787689999998667699-9999807786799---------99988642026776665432338679998445-687675
Q gi|254780606|r 475 KKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMM 543 (744)
Q Consensus 475 ~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~ 543 (744)
T Consensus 94 ~~~l~~~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~---------~~P~lL-LlDEP~saLD~ 163 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV---------REPKVF-LMDEPLSNLDA 163 (213)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH---------CCCCEE-EECCCCCCCCH
T ss_conf 98999859998999999999998759924650995569999999999999987---------599989-98388764298
Q ss_pred HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 31035899999999964201358999851654
Q gi|254780606|r 544 VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 544 ~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 164 ~~r---~~i~~~l~~~~~~~~~T~i~vTHd~~ 192 (213)
T cd03301 164 KLR---VQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHH---HHHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 999---99999999999974998999999989