HHsearch alignment for GI: 254780606 and conserved domain: pfam00308
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.63 E-value=0.36 Score=27.02 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=59.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
T Consensus 36 pl~i~G~~G~GKTHLLqA~~~~~~~~-~~~-~~v~yl~~~----------------------~~---~~~~~~~l~---- 84 (219)
T pfam00308 36 PLFIYGGVGLGKTHLLHAIGNYALRN-FPN-LRVVYLTSE----------------------EF---LNDFVDALR---- 84 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCC-CEEEEEEHH----------------------HH---HHHHHHHHH----
T ss_conf 26998899998889999999999984-999-828884399----------------------99---998899998----
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 99980778679999988642026776665432338679998445687675310358999999999642013589998516
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQr 573 (744)
T Consensus 85 ------~~~~~~f~~~l~~-----------------~d~l~iDDi~~l~--~~~~~ee~lf~l~N~~~~~~~~lllts~~ 139 (219)
T pfam00308 85 ------DNKIEAFKKSYRN-----------------VDLLLIDDIQFLA--GKEKTQEEFFHTFNALHENNKQIVLTSDR 139 (219)
T ss_pred ------CCCHHHHHHHHHH-----------------CCHHHHCCHHHHC--CCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf ------1888899999763-----------------2336522367656--86478999999999999729869997799
Q ss_pred CCCCCCHH
Q ss_conf 54444146
Q gi|254780606|r 574 PSVDVITG 581 (744)
Q Consensus 574 p~~~vi~~ 581 (744)
T Consensus 140 ~p~~-l~~ 146 (219)
T pfam00308 140 PPKE-LEG 146 (219)
T ss_pred CCCC-CCC
T ss_conf 8100-245