HHsearch alignment for GI: 254780606 and conserved domain: pfam02534
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=96.90 E-value=0.0012 Score=44.08 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=36.0
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC--CCC----HHHHHHCCCCEEEEECC
Q ss_conf 79998445687675310358999999999642013589998516544--441----46788505630572036
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV--DVI----TGTIKANFPIRISFQVT 596 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~--~vi----~~~ik~n~~~ri~~~v~ 596 (744)
T Consensus 303 ~vlflLDEF~nlg~-----i~-~l~~~l~~~rg~gi~~~~i~Qs~~QL~~~YG~~~a~til~n~~~~~~f~~~ 369 (468)
T pfam02534 303 EVLFLLDEFPSLGK-----LE-ILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAAS 369 (468)
T ss_pred EEEEEEECHHCCCC-----HH-HHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCCEEEEEECC
T ss_conf 47999982111487-----78-999999988617969999996199999885841278898548738999678