HHsearch alignment for GI: 254780606 and conserved domain: pfam03354

>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=91.73  E-value=0.99  Score=23.99  Aligned_cols=140  Identities=17%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r  415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK  494 (744)
Q Consensus       415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~  494 (744)
T Consensus        25 ~~i~v~RkNGKS~l~a~i~ly~~~~-----------~ge--------~~~e-i~~~A~~~~QA~~~f~~~~~mi~-~~p~   83 (473)
T pfam03354        25 AYVSVGRKNGKSYLMAIRVLYELLL-----------GGK--------SNQE-ILVAATTFKQAEKLFKYVKNQVK-LSPF   83 (473)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHH-----------CCC--------CCCE-EEEEECCHHHHHHHHHHHHHHHH-CCHH
T ss_conf             9999826860269999999999970-----------998--------3874-99997989999999999999997-3987


Q ss_pred             HHHC-CCCCHHHHHHHHHHHH--CCCC--CCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf             9980-7786799999886420--2677--666543233867999844568767531035899999999964201358999
Q gi|254780606|r  495 MSHL-SVRNIKSYNERISTMY--GEKP--QGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM  569 (744)
Q Consensus       495 ~~~~-~~~~i~~~n~~~~~~~--~~~~--~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil  569 (744)
T Consensus        84 l~~~~~~~~~~~~~~~i~~~~t~s~~~~ls~~~~~~dG~~~~~~i~DE~h~~~---~~~~~~~l-~sg~~~r~~~l~~~I  159 (473)
T pfam03354        84 LSIANENKLLKSQKDGIEMKINNNVFKALSNNGDQYDGGNPSLAIFDEMHEFK---DRELVSTI-VTGMRKQDNPQTIQI  159 (473)
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCC---CHHHHHHH-HHHHHCCCCCEEEEE
T ss_conf             77553011013100158980789689998578987669987289987223048---82789999-876316888719997


Q ss_pred             EECCCCCCCC
Q ss_conf             8516544441
Q gi|254780606|r  570 ATQRPSVDVI  579 (744)
Q Consensus       570 atQrp~~~vi  579 (744)
T Consensus       160 TTag~~~~~~  169 (473)
T pfam03354       160 TTAGPNRGGP  169 (473)
T ss_pred             CCCCCCCCCH
T ss_conf             6778898871