HHsearch alignment for GI: 254780606 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=91.73 E-value=0.99 Score=23.99 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=64.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
T Consensus 25 ~~i~v~RkNGKS~l~a~i~ly~~~~-----------~ge--------~~~e-i~~~A~~~~QA~~~f~~~~~mi~-~~p~ 83 (473)
T pfam03354 25 AYVSVGRKNGKSYLMAIRVLYELLL-----------GGK--------SNQE-ILVAATTFKQAEKLFKYVKNQVK-LSPF 83 (473)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHH-----------CCC--------CCCE-EEEEECCHHHHHHHHHHHHHHHH-CCHH
T ss_conf 9999826860269999999999970-----------998--------3874-99997989999999999999997-3987
Q ss_pred HHHC-CCCCHHHHHHHHHHHH--CCCC--CCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 9980-7786799999886420--2677--666543233867999844568767531035899999999964201358999
Q gi|254780606|r 495 MSHL-SVRNIKSYNERISTMY--GEKP--QGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 495 ~~~~-~~~~i~~~n~~~~~~~--~~~~--~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
T Consensus 84 l~~~~~~~~~~~~~~~i~~~~t~s~~~~ls~~~~~~dG~~~~~~i~DE~h~~~---~~~~~~~l-~sg~~~r~~~l~~~I 159 (473)
T pfam03354 84 LSIANENKLLKSQKDGIEMKINNNVFKALSNNGDQYDGGNPSLAIFDEMHEFK---DRELVSTI-VTGMRKQDNPQTIQI 159 (473)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCC---CHHHHHHH-HHHHHCCCCCEEEEE
T ss_conf 77553011013100158980789689998578987669987289987223048---82789999-876316888719997
Q ss_pred EECCCCCCCC
Q ss_conf 8516544441
Q gi|254780606|r 570 ATQRPSVDVI 579 (744)
Q Consensus 570 atQrp~~~vi 579 (744)
T Consensus 160 TTag~~~~~~ 169 (473)
T pfam03354 160 TTAGPNRGGP 169 (473)
T ss_pred CCCCCCCCCH
T ss_conf 6778898871