HHsearch alignment for GI: 254780606 and conserved domain: pfam04157

>pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
Probab=94.73  E-value=0.086  Score=31.29  Aligned_cols=91  Identities=26%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             EEEEC-CCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf             99934-38988999999999840887531-11124555544445667777777660389999999974986232200000
Q gi|254780606|r  630 RVHGP-LVSDIEIEKVVQHLKKQGCPEYL-NTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRL  707 (744)
Q Consensus       630 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~  707 (744)
T Consensus       124 r~~g~~lvSp~Dl~~A~~~l~~Lg~~-~~l~~~~-----sg~~~-v~s~~~~e~~~~~~~il~~~~~~~~vt~~~l~~~l  196 (219)
T pfam04157       124 RARGTELVSPDDLLKACKKLEKLGLG-FKLVKVG-----SGVLV-VQSVPDSELSTDQTKILELAEELGGVTASELAEKL  196 (219)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEC-----CCCEE-EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             72388878999999999999975999-6999977-----97289-98568410468999999999727994899999997


Q ss_pred             CCCHHHHHHHHHHHHHCCCC
Q ss_conf             10078999999999987975
Q gi|254780606|r  708 QIGYNRAALLVERMEQEGLV  727 (744)
Q Consensus       708 ~~g~~ra~~~~~~~e~~g~~  727 (744)
T Consensus       197 ~ws~~~a~e~L~~~~~~G~l  216 (219)
T pfam04157       197 GWSIGRAKEVLEKAEKEGLL  216 (219)
T ss_pred             CCCHHHHHHHHHHHHHCCCE
T ss_conf             98899999999999974997