HHsearch alignment for GI: 254780606 and conserved domain: pfam04157
>pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
Probab=94.73 E-value=0.086 Score=31.29 Aligned_cols=91 Identities=26% Similarity=0.283 Sum_probs=64.0
Q ss_pred EEEEC-CCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 99934-38988999999999840887531-11124555544445667777777660389999999974986232200000
Q gi|254780606|r 630 RVHGP-LVSDIEIEKVVQHLKKQGCPEYL-NTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRL 707 (744)
Q Consensus 630 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~ 707 (744)
T Consensus 124 r~~g~~lvSp~Dl~~A~~~l~~Lg~~-~~l~~~~-----sg~~~-v~s~~~~e~~~~~~~il~~~~~~~~vt~~~l~~~l 196 (219)
T pfam04157 124 RARGTELVSPDDLLKACKKLEKLGLG-FKLVKVG-----SGVLV-VQSVPDSELSTDQTKILELAEELGGVTASELAEKL 196 (219)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEC-----CCCEE-EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 72388878999999999999975999-6999977-----97289-98568410468999999999727994899999997
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q ss_conf 10078999999999987975
Q gi|254780606|r 708 QIGYNRAALLVERMEQEGLV 727 (744)
Q Consensus 708 ~~g~~ra~~~~~~~e~~g~~ 727 (744)
T Consensus 197 ~ws~~~a~e~L~~~~~~G~l 216 (219)
T pfam04157 197 GWSIGRAKEVLEKAEKEGLL 216 (219)
T ss_pred CCCHHHHHHHHHHHHHCCCE
T ss_conf 98899999999999974997