HHsearch alignment for GI: 254780606 and conserved domain: pfam07088
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=94.44 E-value=0.068 Score=32.00 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=43.1
Q ss_pred EEEEHHHHHHHHH------HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHH
Q ss_conf 9998445687675------3103589999999996420135899985165444414678850563057203681110032
Q gi|254780606|r 531 IVIIVDEMADLMM------VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTI 604 (744)
Q Consensus 531 ivvviDE~a~l~~------~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~i 604 (744)
T Consensus 108 ~~Ia~DSW~~i~eyLa~r~d~pe~f~~~~n~lv~lar~~g~~Li~v~E~~~~~~LeY----ivDGVVtL~vk~d~~GR~~ 183 (484)
T pfam07088 108 LTIAFDSWELIYEYLAERHDIPPDILTVTNQLVALARGSGARLVLVLETAQNSRLEY----IVDGVVTLNVKNDERGRTR 183 (484)
T ss_pred CEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH----EEEEEEEEEEEECCCCCEE
T ss_conf 479983289999987776168466756665677766525945999982366775121----2303899988625678376
Q ss_pred CCCCCHHHHCC
Q ss_conf 67631688568
Q gi|254780606|r 605 LGEHGAEQLLG 615 (744)
Q Consensus 605 l~~~gae~l~g 615 (744)
T Consensus 184 -R~L~LeKLRG 193 (484)
T pfam07088 184 -RSLRLEKLRG 193 (484)
T ss_pred -EEEEHHHHCC
T ss_conf -7767234227