BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] (744 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 1556 bits (4030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 744/744 (100%), Positives = 744/744 (100%) Query: 1 MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP 60 MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP Sbjct: 1 MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP 60 Query: 61 KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG 120 KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG Sbjct: 61 KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG 120 Query: 121 SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL 180 SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL Sbjct: 121 SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL 180 Query: 181 SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK 240 SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK Sbjct: 181 SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK 240 Query: 241 PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI 300 PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI Sbjct: 241 PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI 300 Query: 301 LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN 360 LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN Sbjct: 301 LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN 360 Query: 361 AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT 420 AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT Sbjct: 361 AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT 420 Query: 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA Sbjct: 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 Query: 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD Sbjct: 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540 Query: 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID Sbjct: 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600 Query: 601 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV 660 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV Sbjct: 601 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV 660 Query: 661 TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER 720 TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER Sbjct: 661 TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER 720 Query: 721 MEQEGLVSEADHVGKRHVFSEKFS 744 MEQEGLVSEADHVGKRHVFSEKFS Sbjct: 721 MEQEGLVSEADHVGKRHVFSEKFS 744 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 617 bits (1591), Expect = e-178, Method: Compositional matrix adjust. Identities = 312/528 (59%), Positives = 396/528 (75%), Gaps = 30/528 (5%) Query: 239 HKPSSSNTMTEH-----MFQDTSQE--IAKGQKQYEQPCSSFLQV-QSNVNLQGITHEIL 290 H N++TE+ + Q+ SQ I G + P L QS VN + +++ Sbjct: 273 HDAIDINSITEYQLNADIVQNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVM 332 Query: 291 EKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLS 350 + NA +L+++L +FGI+GEI+NV PGPV+TLYE EPAPGIKSSR+IGL+DDIARSMS++S Sbjct: 333 QNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAIS 392 Query: 351 ARVAVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA 410 ARVAVIP+RNAIGIELPN+ RETV LR +I SR F ++ +LA+ LGK+I G+ +IADLA Sbjct: 393 ARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLA 452 Query: 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV 470 MPH+L+AGTTGSGKSVAINTMI+SLLYR+ P +CR+IM+DPKMLELSVYDGIP+LLTPV Sbjct: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 Query: 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMY--GEK---------PQ 519 VTNP+KAV LKW V EMEERY+KMS + VRNI +N +++ + G+K + Sbjct: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 Query: 520 GCGD--------DMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571 G+ D + MPYIV+++DEMADLMMVA K+IE A+QRLAQMARA+GIH+IMAT Sbjct: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632 Query: 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRV 631 QRPSVDVITGTIKANFP RISFQV+SKIDSRTILGE GAEQLLG+GDMLYM+GGGR+QR+ Sbjct: 633 QRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRI 692 Query: 632 HGPLVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDL 691 HGP VSDIE+EKVV HLK QG +Y++ D + F SE +LY +AVD+ Sbjct: 693 HGPFVSDIEVEKVVSHLKTQGEAKYID--IKDKILLNEEMRF-SENSSVADDLYKQAVDI 749 Query: 692 VIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVF 739 V+ + + S S+IQRRL IGYNRAA ++E ME++G++ A GKR + Sbjct: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREIL 797 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 26.2 bits (56), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 415 ILVAGTTGSGKSVAINTMIMSLLY----RLRPDECRMIMVDPKMLELSVYDG 462 +LV+ TGSGK+VA + S L R P + + EL+V G Sbjct: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 25.8 bits (55), Expect = 2.8, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 16/19 (84%) Query: 416 LVAGTTGSGKSVAINTMIM 434 +++G TGSGKS+ ++ +I+ Sbjct: 25 ILSGDTGSGKSILLDALIL 43 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 25.0 bits (53), Expect = 4.7, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 15/19 (78%) Query: 414 HILVAGTTGSGKSVAINTM 432 ++L++G TGSGK+ +N + Sbjct: 252 NVLISGGTGSGKTTLLNCL 270 >gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 416 Score = 25.0 bits (53), Expect = 4.8, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 635 LVSDIEIE-KVVQHLKKQGCPEYLNTVTTDTDT 666 +V+DI I V+Q++ +G N++T D DT Sbjct: 203 VVTDINISPAVLQNILSEGAEYSFNSITVDGDT 235 >gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str. psy62] Length = 179 Score = 24.3 bits (51), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVT 596 ++ADL++ G ++ L ++ GIH IM + V + TI N + T Sbjct: 110 DIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADV---STTITLNVA-----RST 161 Query: 597 SKIDSRTILGEHGAEQL 613 ++ + ILGEH E L Sbjct: 162 EEMVKQDILGEHEEEIL 178 >gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 165 Score = 24.3 bits (51), Expect = 7.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 22/41 (53%) Query: 396 LGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436 + +T+ G + + MP + GT G+S AIN ++++ Sbjct: 91 ISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAV 131 >gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 24.3 bits (51), Expect = 7.5, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 285 ITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFE 325 I +I+ N +TILE+ I+ + N+ P V E E Sbjct: 135 IAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKE 175 >gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 23.9 bits (50), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%) Query: 171 EGLSTPHSFLSFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKK 218 + + PHS+L ND P+PI DH H +Y KK Sbjct: 438 QYIHAPHSWLDKNDLSLNYPLPI------VDHKKACHHTLNQYYAAKK 479 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust. Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Query: 277 QSNVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVI 336 ++ V +QG E LE +L+ + E G+ E+ ++ PGI S + Sbjct: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI--------------PGIDSKIKV 449 Query: 337 GLADDIARSMSSLSA 351 L ++ ++M L+ Sbjct: 450 ALGENGIKTMEDLAG 464 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.131 0.372 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 458,654 Number of Sequences: 1233 Number of extensions: 18779 Number of successful extensions: 68 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 18 length of query: 744 length of database: 328,796 effective HSP length: 81 effective length of query: 663 effective length of database: 228,923 effective search space: 151775949 effective search space used: 151775949 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 42 (20.8 bits)