BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780606|ref|YP_003065019.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(744 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 1556 bits (4030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/744 (100%), Positives = 744/744 (100%)
Query: 1 MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP 60
MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP
Sbjct: 1 MKCSKKNNLHWLETPHKQVDLKSFVPPWHEAFLLAPNVRFTRTPENDLNRYRNNSTLQQP 60
Query: 61 KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG 120
KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG
Sbjct: 61 KETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQFNSQKTPHKLHLVQKNG 120
Query: 121 SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL 180
SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL
Sbjct: 121 SHPDPNMQKETIEPSLDVIEEVNTDTASNVSDQINQNPDTLSWLSDFAFFEGLSTPHSFL 180
Query: 181 SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK 240
SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK
Sbjct: 181 SFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK 240
Query: 241 PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI 300
PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI
Sbjct: 241 PSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETI 300
Query: 301 LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN 360
LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN
Sbjct: 301 LEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRN 360
Query: 361 AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT 420
AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT
Sbjct: 361 AIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGT 420
Query: 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480
TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA
Sbjct: 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480
Query: 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540
LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD
Sbjct: 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540
Query: 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600
LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID
Sbjct: 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600
Query: 601 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV 660
SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV
Sbjct: 601 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTV 660
Query: 661 TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER 720
TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER
Sbjct: 661 TTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVER 720
Query: 721 MEQEGLVSEADHVGKRHVFSEKFS 744
MEQEGLVSEADHVGKRHVFSEKFS
Sbjct: 721 MEQEGLVSEADHVGKRHVFSEKFS 744
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 617 bits (1591), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/528 (59%), Positives = 396/528 (75%), Gaps = 30/528 (5%)
Query: 239 HKPSSSNTMTEH-----MFQDTSQE--IAKGQKQYEQPCSSFLQV-QSNVNLQGITHEIL 290
H N++TE+ + Q+ SQ I G + P L QS VN + +++
Sbjct: 273 HDAIDINSITEYQLNADIVQNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVM 332
Query: 291 EKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLS 350
+ NA +L+++L +FGI+GEI+NV PGPV+TLYE EPAPGIKSSR+IGL+DDIARSMS++S
Sbjct: 333 QNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAIS 392
Query: 351 ARVAVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA 410
ARVAVIP+RNAIGIELPN+ RETV LR +I SR F ++ +LA+ LGK+I G+ +IADLA
Sbjct: 393 ARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLA 452
Query: 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV 470
MPH+L+AGTTGSGKSVAINTMI+SLLYR+ P +CR+IM+DPKMLELSVYDGIP+LLTPV
Sbjct: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
Query: 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMY--GEK---------PQ 519
VTNP+KAV LKW V EMEERY+KMS + VRNI +N +++ + G+K +
Sbjct: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
Query: 520 GCGD--------DMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571
G+ D + MPYIV+++DEMADLMMVA K+IE A+QRLAQMARA+GIH+IMAT
Sbjct: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632
Query: 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRV 631
QRPSVDVITGTIKANFP RISFQV+SKIDSRTILGE GAEQLLG+GDMLYM+GGGR+QR+
Sbjct: 633 QRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRI 692
Query: 632 HGPLVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDL 691
HGP VSDIE+EKVV HLK QG +Y++ D + F SE +LY +AVD+
Sbjct: 693 HGPFVSDIEVEKVVSHLKTQGEAKYID--IKDKILLNEEMRF-SENSSVADDLYKQAVDI 749
Query: 692 VIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVF 739
V+ + + S S+IQRRL IGYNRAA ++E ME++G++ A GKR +
Sbjct: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREIL 797
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 26.2 bits (56), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 415 ILVAGTTGSGKSVAINTMIMSLLY----RLRPDECRMIMVDPKMLELSVYDG 462
+LV+ TGSGK+VA + S L R P + + EL+V G
Sbjct: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 25.8 bits (55), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 416 LVAGTTGSGKSVAINTMIM 434
+++G TGSGKS+ ++ +I+
Sbjct: 25 ILSGDTGSGKSILLDALIL 43
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 25.0 bits (53), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 414 HILVAGTTGSGKSVAINTM 432
++L++G TGSGK+ +N +
Sbjct: 252 NVLISGGTGSGKTTLLNCL 270
>gi|254780326|ref|YP_003064739.1| bifunctional ornithine acetyltransferase/N-acetylglutamate synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 416
Score = 25.0 bits (53), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 635 LVSDIEIE-KVVQHLKKQGCPEYLNTVTTDTDT 666
+V+DI I V+Q++ +G N++T D DT
Sbjct: 203 VVTDINISPAVLQNILSEGAEYSFNSITVDGDT 235
>gi|254780331|ref|YP_003064744.1| 50S ribosomal protein L9 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 179
Score = 24.3 bits (51), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVT 596
++ADL++ G ++ L ++ GIH IM + V + TI N + T
Sbjct: 110 DIADLLIEEGFDVNRGQINLKSPIKSVGIHNIMISLHADV---STTITLNVA-----RST 161
Query: 597 SKIDSRTILGEHGAEQL 613
++ + ILGEH E L
Sbjct: 162 EEMVKQDILGEHEEEIL 178
>gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 165
Score = 24.3 bits (51), Expect = 7.3, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 396 LGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436
+ +T+ G + + MP + GT G+S AIN ++++
Sbjct: 91 ISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAV 131
>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 207
Score = 24.3 bits (51), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 285 ITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFE 325
I +I+ N +TILE+ I+ + N+ P V E E
Sbjct: 135 IAQKIVANNPTEKQTILEQLSIRNSLKNIRNFPFVNKLEKE 175
>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 483
Score = 23.9 bits (50), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 171 EGLSTPHSFLSFNDHHQYTPIPIQSAEDLSDHTDLAPHMSTEYLHNKK 218
+ + PHS+L ND P+PI DH H +Y KK
Sbjct: 438 QYIHAPHSWLDKNDLSLNYPLPI------VDHKKACHHTLNQYYAAKK 479
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 23.9 bits (50), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 277 QSNVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVI 336
++ V +QG E LE +L+ + E G+ E+ ++ PGI S +
Sbjct: 404 ETAVEIQGRAREYLEGIDITLQKKIRELGVSEELCSI--------------PGIDSKIKV 449
Query: 337 GLADDIARSMSSLSA 351
L ++ ++M L+
Sbjct: 450 ALGENGIKTMEDLAG 464
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,654
Number of Sequences: 1233
Number of extensions: 18779
Number of successful extensions: 68
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 18
length of query: 744
length of database: 328,796
effective HSP length: 81
effective length of query: 663
effective length of database: 228,923
effective search space: 151775949
effective search space used: 151775949
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)