Query gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 131 No_of_seqs 104 out of 574 Neff 7.8 Searched_HMMs 39220 Date Sun May 29 21:20:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780607.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 COG3755 Uncharacterized protei 99.9 5.2E-24 1.3E-28 162.2 10.9 105 15-119 20-126 (127) 2 pfam07007 DUF1311 Protein of u 99.8 5.5E-20 1.4E-24 138.3 12.3 92 22-113 1-92 (92) 3 COG4461 LprI Uncharacterized p 99.2 6.6E-11 1.7E-15 84.5 9.0 97 1-115 1-100 (185) 4 PHA02067 hypothetical protein 97.9 2.5E-05 6.3E-10 51.4 5.8 105 1-128 1-106 (221) 5 PRK10780 periplasmic chaperone 77.3 5.6 0.00014 19.6 6.6 22 1-22 1-22 (161) 6 PRK02998 prsA peptidylprolyl i 65.5 10 0.00027 18.0 5.8 18 1-18 1-18 (283) 7 PRK10626 hypothetical protein; 55.6 9.7 0.00025 18.2 2.4 77 1-77 1-103 (239) 8 PRK13861 type IV secretion sys 55.1 8 0.0002 18.7 1.9 21 1-21 1-22 (293) 9 pfam11853 DUF3373 Protein of u 50.3 19 0.00049 16.4 4.5 21 1-21 1-23 (485) 10 PRK10641 btuB vitamin B12/coba 44.9 15 0.00038 17.1 2.0 22 1-22 1-22 (615) 11 PRK10877 thiol:disulfide inter 43.8 16 0.00041 16.9 2.0 21 1-21 1-22 (232) 12 PRK03641 hypothetical protein; 40.9 19 0.00048 16.5 2.0 20 1-20 1-20 (220) 13 pfam09403 FadA Adhesion protei 38.1 30 0.00076 15.3 4.2 19 1-19 1-19 (126) 14 PRK03095 prsA peptidylprolyl i 36.4 32 0.00081 15.1 5.5 19 1-19 1-19 (287) 15 PRK04792 tolB translocation pr 34.9 29 0.00074 15.4 2.2 17 1-17 1-17 (450) 16 PRK01326 prsA foldase protein 33.0 36 0.00092 14.8 6.7 27 34-60 64-92 (310) 17 PRK03002 prsA peptidylprolyl i 32.6 37 0.00093 14.8 6.1 14 1-14 1-14 (285) 18 TIGR02051 MerR Hg(II)-responsi 32.5 30 0.00077 15.3 1.9 17 114-130 105-124 (126) 19 pfam11777 DUF3316 Protein of u 31.9 38 0.00096 14.7 2.7 52 1-53 1-56 (114) 20 pfam05079 DUF680 Protein of un 31.0 33 0.00084 15.0 1.9 20 1-20 1-20 (73) 21 pfam06649 DUF1161 Protein of u 30.9 24 0.0006 15.9 1.2 24 1-24 1-25 (75) 22 PRK10954 periplasmic protein d 30.2 38 0.00098 14.6 2.2 26 95-120 141-166 (207) 23 KOG4721 consensus 30.2 40 0.001 14.5 5.1 45 68-119 382-426 (904) 24 KOG3262 consensus 29.9 20 0.00051 16.3 0.7 23 107-130 50-73 (215) 25 PRK10290 superoxide dismutase; 27.9 44 0.0011 14.3 2.1 19 1-19 1-19 (173) 26 TIGR03431 PhnD phosphonate ABC 27.6 43 0.0011 14.3 2.0 22 1-22 1-24 (288) 27 PRK10894 hypothetical protein; 25.2 48 0.0012 14.1 1.9 22 1-22 8-29 (184) 28 pfam04076 BOF Bacterial OB fol 24.9 47 0.0012 14.1 1.8 19 1-20 1-19 (126) 29 PRK10554 outer membrane porin 23.3 54 0.0014 13.8 1.9 22 1-22 1-23 (373) 30 PRK12789 flgI flagellar basal 23.0 54 0.0014 13.7 2.0 17 1-17 1-17 (367) 31 PRK10598 hypothetical protein; 22.9 55 0.0014 13.7 4.3 41 1-41 1-41 (186) 32 TIGR03519 Bac_Flav_fam_1 Bacte 22.4 56 0.0014 13.7 1.9 19 1-19 1-19 (292) 33 PRK09733 putative fimbrial pro 21.9 57 0.0015 13.6 1.9 20 1-20 2-21 (181) No 1 >COG3755 Uncharacterized protein conserved in bacteria [Function unknown] Probab=99.91 E-value=5.2e-24 Score=162.24 Aligned_cols=105 Identities=29% Similarity=0.502 Sum_probs=96.5 Q ss_pred HHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 31012202378899899999-9999999999999999999997329356899-999999999999997887551246883 Q gi|254780607|r 15 AFQSMALNCNETLMQADMNQ-CTGNSFALVKEKLEATYKKVLEKVEKHQREL-FEKSQMAWEIYRGSECAFAASGAEEGT 92 (131) Q Consensus 15 s~~a~a~dC~~a~t~~e~~~-C~~~~~~~ad~~Ln~~y~~l~~~l~~~~~~~-L~~sQr~W~~~R~~~C~~~~~~~~~Gs 92 (131) ..+..+.||..+.++.+++. |+.++++.+|++||+.|+.++++++..++.. |+++||+||+|||++|....+...||| T Consensus 20 ~~~~~a~~C~~~~~~~d~~~~C~~~e~~~aDa~LN~AY~~ll~~l~~~~~~~aL~kaQRAWi~fRDadC~~~~~~~~ggs 99 (127) T COG3755 20 TSQSAADDCCRASPQFDSNYDCAGQEYQAADAELNKAYKALLKRLQDSPRTKALQKAQRAWIAFRDADCALIKSQLDGGS 99 (127) T ss_pred CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 00140688657887553144888778999999999999999987205768899999999999972576888751015898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 567999999999999999999997137 Q gi|254780607|r 93 AQSMIYANCLQGHAIERNEKLESYLTC 119 (131) Q Consensus 93 ~~~~~~~~C~~~~t~~R~~eL~~~l~~ 119 (131) +.++.+.+|++++|++|+.||+.++++ T Consensus 100 ~~~~~~~~C~~d~T~~R~~eL~~~~~~ 126 (127) T COG3755 100 IAPMEVLSCLLDLTNQRTAELEELLQP 126 (127) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 206899999899999999999998646 No 2 >pfam07007 DUF1311 Protein of unknown function (DUF1311). This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown. Probab=99.84 E-value=5.5e-20 Score=138.34 Aligned_cols=92 Identities=30% Similarity=0.551 Sum_probs=88.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 23788998999999999999999999999999997329356899999999999999997887551246883567999999 Q gi|254780607|r 22 NCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGSECAFAASGAEEGTAQSMIYANC 101 (131) Q Consensus 22 dC~~a~t~~e~~~C~~~~~~~ad~~Ln~~y~~l~~~l~~~~~~~L~~sQr~W~~~R~~~C~~~~~~~~~Gs~~~~~~~~C 101 (131) +|..+.++.+|++|+..++..+|++||.+|+.+++.++++.++.|+.+|++|++||+++|.+.+..+++||+.++.+.+| T Consensus 1 ~C~~~~~~~~~~~C~~~~~~~~d~~L~~~y~~~~~~l~~~~~~~L~~sQ~~W~~~Rd~~C~~~~~~~~~Gs~~~~~~~~C 80 (92) T pfam07007 1 DCAKASTTAEMAICADAELAAADAELNAAYQALLAALPADARAALRAAQRAWLKYRDAECDFEASLYGGGSIAPLAYAAC 80 (92) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 99987899999999899999999999999999998778767899999999999999978778772238995898999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780607|r 102 LQGHAIERNEKL 113 (131) Q Consensus 102 ~~~~t~~R~~eL 113 (131) ++++|++|+.+| T Consensus 81 ~~~~t~~R~~eL 92 (92) T pfam07007 81 LARLTRERIAEL 92 (92) T ss_pred HHHHHHHHHHHC T ss_conf 999999999639 No 3 >COG4461 LprI Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown] Probab=99.23 E-value=6.6e-11 Score=84.46 Aligned_cols=97 Identities=15% Similarity=0.369 Sum_probs=81.7 Q ss_pred CCHHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 925999999999963---10122023788998999999999999999999999999997329356899999999999999 Q gi|254780607|r 1 MCRKIIFALTIIAIA---FQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYR 77 (131) Q Consensus 1 m~k~il~~~~~~~~s---~~a~a~dC~~a~t~~e~~~C~~~~~~~ad~~Ln~~y~~l~~~l~~~~~~~L~~sQr~W~~~R 77 (131) |.++++.+.+++.+. +.+++|||.++.+..|..+|++..+...|.+|+.+|+.+. -...+..+++.|+.|++-| T Consensus 1 ~la~~L~gg~ll~p~~l~a~aaSfDC~KA~~~vEkaICan~~L~~lD~~~~t~Y~ql~---a~~~~~~lr~~qq~Wlk~r 77 (185) T COG4461 1 VLALLLLGGALLTPLSLTASAASFDCTKASTPVEKAICANRQLNDLDVTLSTAYQQLF---AMGRRGALRDAQQSWLKLR 77 (185) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHH T ss_conf 9379975346650577630445536666564257775177423067899999999987---1443377999999999988 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99788755124688356799999999999999999999 Q gi|254780607|r 78 GSECAFAASGAEEGTAQSMIYANCLQGHAIERNEKLES 115 (131) Q Consensus 78 ~~~C~~~~~~~~~Gs~~~~~~~~C~~~~t~~R~~eL~~ 115 (131) ++ |.... .|+.+-+.+|+.+|.. T Consensus 78 ~~-C~sDt--------------dcl~~AY~~ri~qL~~ 100 (185) T COG4461 78 NA-CASDT--------------DCLQRAYEQRLAQLSK 100 (185) T ss_pred HH-HCCCH--------------HHHHHHHHHHHHHHHC T ss_conf 75-32213--------------8999999999999702 No 4 >PHA02067 hypothetical protein Probab=97.92 E-value=2.5e-05 Score=51.38 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=78.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 925999999999963101220237889-9899999999999999999999999999732935689999999999999999 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALNCNETL-MQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGS 79 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~dC~~a~-t~~e~~~C~~~~~~~ad~~Ln~~y~~l~~~l~~~~~~~L~~sQr~W~~~R~~ 79 (131) |+-.-++++.+.+.+..++++||..+. +..|..+|+..+....|..|...|..+.. .+ ..+..|+.+++-|++ T Consensus 1 mk~lsviAL~l~as~A~aASfDC~~~gln~iEkaiCaVPels~lDdQlaeAyk~v~h-ip-----~vk~dq~~~ik~rn~ 74 (221) T PHA02067 1 MKFLSVIALGLLSSSAMAASFDCNTTGLNSIEKAICKVPELSMMDQQLADAYKVVRH-IP-----EVKADQKTFIKDRNS 74 (221) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH-CC-----CCCCCHHHHHHCCCC T ss_conf 917999999997200655216332248878988884274121367999999999860-87-----645015667423677 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 7887551246883567999999999999999999997137236758899 Q gi|254780607|r 80 ECAFAASGAEEGTAQSMIYANCLQGHAIERNEKLESYLTCPEGDLLCPF 128 (131) Q Consensus 80 ~C~~~~~~~~~Gs~~~~~~~~C~~~~t~~R~~eL~~~l~~~eg~~~~~~ 128 (131) .-. .+-+-+..+.||.||+-..+.+ |-.-.|. T Consensus 75 ~~s----------------l~~lkd~m~driiel~iiaele-gv~~kp~ 106 (221) T PHA02067 75 APS----------------LGDLKDLMRDRIIELEIIAELE-GVEAKPY 106 (221) T ss_pred CCC----------------HHHHHHHHHHHHHHHHHHHHHH-CCCCCCC T ss_conf 876----------------6888888664302332336543-3335885 No 5 >PRK10780 periplasmic chaperone; Provisional Probab=77.28 E-value=5.6 Score=19.61 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=15.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 9259999999999631012202 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALN 22 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~d 22 (131) |+|.++.+++.++++++|.|.. T Consensus 1 mKk~l~~~~l~l~l~~~a~Aa~ 22 (161) T PRK10780 1 MKKWLLAAGLGLALATSAQAAD 22 (161) T ss_pred CHHHHHHHHHHHHHHHHHHHHH T ss_conf 9589999999998588887753 No 6 >PRK02998 prsA peptidylprolyl isomerase; Reviewed Probab=65.51 E-value=10 Score=17.99 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 925999999999963101 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQS 18 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a 18 (131) |+|+-++++++++.++.+ T Consensus 1 Mkkkk~~~~~~~~~~~l~ 18 (283) T PRK02998 1 MKKKKLFIGTIISCVVLA 18 (283) T ss_pred CCHHHHHHHHHHHHHHHH T ss_conf 935899999999999999 No 7 >PRK10626 hypothetical protein; Provisional Probab=55.62 E-value=9.7 Score=18.19 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=41.2 Q ss_pred CCHHHHHHHHHHHHHHHHCC-CCCCC-CCC-------HHHHHH----------------HHHHHHHHHHHHHHHHHH-HH Q ss_conf 92599999999996310122-02378-899-------899999----------------999999999999999999-99 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMA-LNCNE-TLM-------QADMNQ----------------CTGNSFALVKEKLEATYK-KV 54 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a-~dC~~-a~t-------~~e~~~----------------C~~~~~~~ad~~Ln~~y~-~l 54 (131) |.|++++++++++.+++|.+ .+|.- +.. +.++.. =-.-.+....++.-..|+ .+ T Consensus 1 m~r~~~~~~~l~~~a~~a~a~~qC~V~pqdDIiItpq~VqV~gang~l~I~pdG~l~~nGk~v~Ls~~Qrq~a~~YQ~~l 80 (239) T PRK10626 1 MMRKTLLAAVLSVTAMTAHADYQCSVTPRDDVIISPQTVQVKGENGNLVITPDGNVMRNGKQYTLNAAQREQAKDYQAEL 80 (239) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCEEECCCCCEEECCEEEECCHHHHHHHHHHHHHH T ss_conf 90899999999999999860678888878776675763799717786788789876887876301899999999999999 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 97329356899999999999999 Q gi|254780607|r 55 LEKVEKHQRELFEKSQMAWEIYR 77 (131) Q Consensus 55 ~~~l~~~~~~~L~~sQr~W~~~R 77 (131) +..+|--.+....+-+++|..-- T Consensus 81 R~dLPwi~~~a~~~l~~ar~aLD 103 (239) T PRK10626 81 RSDLPWIDEGAKSRLEKARVALD 103 (239) T ss_pred HHHCCHHHHHHHHHHHHHHHHHH T ss_conf 87181655778989999999999 No 8 >PRK13861 type IV secretion system protein VirB9; Provisional Probab=55.14 E-value=8 Score=18.69 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=13.5 Q ss_pred CCHHHHHHHHHHH-HHHHHCCC Q ss_conf 9259999999999-63101220 Q gi|254780607|r 1 MCRKIIFALTIIA-IAFQSMAL 21 (131) Q Consensus 1 m~k~il~~~~~~~-~s~~a~a~ 21 (131) |+|++++++++++ .+..|.|. T Consensus 1 mmk~l~~~~~~~l~~~~~a~A~ 22 (293) T PRK13861 1 MIKKLFLTLACLLFAAIGALAE 22 (293) T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 9089999999999861266787 No 9 >pfam11853 DUF3373 Protein of unknown function (DUF3373). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length. Probab=50.31 E-value=19 Score=16.44 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=11.5 Q ss_pred CCHHHHHHHHHH--HHHHHHCCC Q ss_conf 925999999999--963101220 Q gi|254780607|r 1 MCRKIIFALTII--AIAFQSMAL 21 (131) Q Consensus 1 m~k~il~~~~~~--~~s~~a~a~ 21 (131) |+|.+.++++.. +.|..+.+. T Consensus 1 Mkk~~~l~~~aall~~s~~~~a~ 23 (485) T pfam11853 1 MKKLVSLSLVAALLALSLPAAAA 23 (485) T ss_pred CCHHHHHHHHHHHHHHCCCHHCC T ss_conf 91147899999999750410013 No 10 >PRK10641 btuB vitamin B12/cobalamin outer membrane transporter; Provisional Probab=44.88 E-value=15 Score=17.07 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=17.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 9259999999999631012202 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALN 22 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~d 22 (131) |+||+.+..++.+.+..+.|+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~ 22 (615) T PRK10641 1 MIKKASLLTALSVTAFSAWAQD 22 (615) T ss_pred CCHHHHHHHHHHHHCCHHHHCC T ss_conf 9448999999987513354335 No 11 >PRK10877 thiol:disulfide interchange protein DsbC; Provisional Probab=43.82 E-value=16 Score=16.87 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=11.5 Q ss_pred CCHHHHHHHHH-HHHHHHHCCC Q ss_conf 92599999999-9963101220 Q gi|254780607|r 1 MCRKIIFALTI-IAIAFQSMAL 21 (131) Q Consensus 1 m~k~il~~~~~-~~~s~~a~a~ 21 (131) |+|.+++..++ +.++.+|.|+ T Consensus 1 mkk~l~~~~~l~~~~s~~a~aD 22 (232) T PRK10877 1 MKKGFMLFTLLAAAFSGFAHAD 22 (232) T ss_pred CCHHHHHHHHHHHHHHHHHHCC T ss_conf 9266999999999986252437 No 12 >PRK03641 hypothetical protein; Provisional Probab=40.93 E-value=19 Score=16.46 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=11.2 Q ss_pred CCHHHHHHHHHHHHHHHHCC Q ss_conf 92599999999996310122 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMA 20 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a 20 (131) |++.|+.+++.+++|..+.| T Consensus 1 m~~~~i~~llal~~S~~~~A 20 (220) T PRK03641 1 MKTGIVTTLLALCLPVSVFA 20 (220) T ss_pred CCHHHHHHHHHHHHHHHHHE T ss_conf 91169999999986236450 No 13 >pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. Probab=38.09 E-value=30 Score=15.29 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=11.0 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9259999999999631012 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSM 19 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~ 19 (131) |+|.+++++++++.++.++ T Consensus 1 MkK~ll~~~llls~~s~aa 19 (126) T pfam09403 1 MKKILLCSMLILSSLSYAA 19 (126) T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 9169999999999999874 No 14 >PRK03095 prsA peptidylprolyl isomerase; Reviewed Probab=36.37 E-value=32 Score=15.13 Aligned_cols=19 Identities=16% Similarity=0.203 Sum_probs=10.2 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9259999999999631012 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSM 19 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~ 19 (131) |+|.++.++++..++..|. T Consensus 1 MKK~~la~~~~svl~LaaC 19 (287) T PRK03095 1 MKKAMLALAATSVIALSAC 19 (287) T ss_pred CCHHHHHHHHHHHHHHHHC T ss_conf 9078999999999999851 No 15 >PRK04792 tolB translocation protein TolB; Provisional Probab=34.95 E-value=29 Score=15.37 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=10.7 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 92599999999996310 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQ 17 (131) Q Consensus 1 m~k~il~~~~~~~~s~~ 17 (131) |+|++++.++++++.+. T Consensus 1 M~k~~~~~l~lll~~~s 17 (450) T PRK04792 1 MLKRLILGLFVLLLSFS 17 (450) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 93899999999999865 No 16 >PRK01326 prsA foldase protein PrsA; Reviewed Probab=33.01 E-value=36 Score=14.80 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=13.8 Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHCCH Q ss_conf 9999999--99999999999999973293 Q gi|254780607|r 34 QCTGNSF--ALVKEKLEATYKKVLEKVEK 60 (131) Q Consensus 34 ~C~~~~~--~~ad~~Ln~~y~~l~~~l~~ 60 (131) .-....| ...|++.++.|....++... T Consensus 64 kvLe~~Yg~kVsdkeV~~~~~~~k~qyG~ 92 (310) T PRK01326 64 RVFEKQYGDKVSDKEVEKAYHKTAKQYGA 92 (310) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999862617899999999999999868 No 17 >PRK03002 prsA peptidylprolyl isomerase; Reviewed Probab=32.58 E-value=37 Score=14.76 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=9.2 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 92599999999996 Q gi|254780607|r 1 MCRKIIFALTIIAI 14 (131) Q Consensus 1 m~k~il~~~~~~~~ 14 (131) |+|+++++++.++. T Consensus 1 mkkK~i~~~~~~~s 14 (285) T PRK03002 1 MRGKHIFIITALIS 14 (285) T ss_pred CCHHHHHHHHHHHH T ss_conf 96018999999999 No 18 >TIGR02051 MerR Hg(II)-responsive transcriptional regulator; InterPro: IPR011794 This entry represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon . This protein is a member of the MerR family of transcriptional activators and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix .; GO: 0003677 DNA binding, 0045340 mercury ion binding, 0045449 regulation of transcription, 0046689 response to mercury ion. Probab=32.53 E-value=30 Score=15.26 Aligned_cols=17 Identities=41% Similarity=1.017 Sum_probs=12.4 Q ss_pred HHHCC-CC--CCCCCCCCCC Q ss_conf 99713-72--3675889989 Q gi|254780607|r 114 ESYLT-CP--EGDLLCPFIN 130 (131) Q Consensus 114 ~~~l~-~~--eg~~~~~~~~ 130 (131) +.++. |+ .|+.+||.|. T Consensus 105 ~el~~~C~~~~~~~~CPIIe 124 (126) T TIGR02051 105 EELLEQCPANKDNTSCPIIE 124 (126) T ss_pred HHHHHHCCCCCCCEECCCCC T ss_conf 99986151458882167201 No 19 >pfam11777 DUF3316 Protein of unknown function (DUF3316). This family of bacterial proteins has no known function. Several members are, however, annotated as being putative acyl-CoA synthetase, but this could not be confirmed. Probab=31.91 E-value=38 Score=14.69 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=23.1 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC-CCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 92599999999996310122023-788---998999999999999999999999999 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALNC-NET---LMQADMNQCTGNSFALVKEKLEATYKK 53 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~dC-~~a---~t~~e~~~C~~~~~~~ad~~Ln~~y~~ 53 (131) |||.++++ +++.++..|.|..- ... ..+.+...--...|+..-..++..|.. T Consensus 1 mKk~~ll~-~~ll~s~~AfA~~~~~~~~~~~~~~~~~~tk~~AY~~G~~~~~~l~~~ 56 (114) T pfam11777 1 MKKLILLA-LLLLLSATAFAGNYVSTTQTDSLQTDVYATKQAAYGAGFTNLNDLYLS 56 (114) T ss_pred CHHHHHHH-HHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 91089999-999998888755553655625897155305999999999999988606 No 20 >pfam05079 DUF680 Protein of unknown function (DUF680). This family contains several uncharacterized proteins which seem to be found exclusively in Rhizobium loti. Probab=31.05 E-value=33 Score=15.03 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=15.4 Q ss_pred CCHHHHHHHHHHHHHHHHCC Q ss_conf 92599999999996310122 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMA 20 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a 20 (131) |+|.+|.+..+|..++.|++ T Consensus 1 M~KiaLtaAAiL~asgsAFA 20 (73) T pfam05079 1 MKKIALTAAAILAASGSAFA 20 (73) T ss_pred CCHHHHHHHHHHHHCCCCCC T ss_conf 92248999999997065221 No 21 >pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function. Probab=30.89 E-value=24 Score=15.88 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=12.9 Q ss_pred CCHHHHHHHHHHHH-HHHHCCCCCC Q ss_conf 92599999999996-3101220237 Q gi|254780607|r 1 MCRKIIFALTIIAI-AFQSMALNCN 24 (131) Q Consensus 1 m~k~il~~~~~~~~-s~~a~a~dC~ 24 (131) |+|.++++.++++. +..|+...|. T Consensus 1 Mkk~~l~~~l~lla~~alAA~~sCE 25 (75) T pfam06649 1 MKRLLLAVALLLLAASALAAPKSCE 25 (75) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 9246999999997134531558889 No 22 >PRK10954 periplasmic protein disulfide isomerase I; Provisional Probab=30.22 E-value=38 Score=14.63 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 79999999999999999999971372 Q gi|254780607|r 95 SMIYANCLQGHAIERNEKLESYLTCP 120 (131) Q Consensus 95 ~~~~~~C~~~~t~~R~~eL~~~l~~~ 120 (131) --.+.+-.++.-..|...+..-.... T Consensus 141 ~~~~~Sf~V~~~v~~a~~~~~~~~I~ 166 (207) T PRK10954 141 DAAWNSFVVKSLVAQQEKAAADLQLR 166 (207) T ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCC T ss_conf 99985889999999999999972888 No 23 >KOG4721 consensus Probab=30.21 E-value=40 Score=14.52 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999997887551246883567999999999999999999997137 Q gi|254780607|r 68 KSQMAWEIYRGSECAFAASGAEEGTAQSMIYANCLQGHAIERNEKLESYLTC 119 (131) Q Consensus 68 ~sQr~W~~~R~~~C~~~~~~~~~Gs~~~~~~~~C~~~~t~~R~~eL~~~l~~ 119 (131) ++|..|..+.. |.+.....+|..++ .-..++.+.|..||.-.++. T Consensus 382 ~sq~swrEevk--~h~~~it~~gt~ih-----~~eeelirrR~eelrHa~DI 426 (904) T KOG4721 382 KSQASWREEVK--LHFEKITSEGTCIH-----RLEEELIRRRREELRHALDI 426 (904) T ss_pred HHHHHHHHHHH--HHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHHHHH T ss_conf 87999999998--76422235861287-----88999999999998888889 No 24 >KOG3262 consensus Probab=29.89 E-value=20 Score=16.32 Aligned_cols=23 Identities=43% Similarity=0.853 Sum_probs=16.1 Q ss_pred HHHHHHHHHHCC-CCCCCCCCCCCC Q ss_conf 999999999713-723675889989 Q gi|254780607|r 107 IERNEKLESYLT-CPEGDLLCPFIN 130 (131) Q Consensus 107 ~~R~~eL~~~l~-~~eg~~~~~~~~ 130 (131) -+++.||-.++| | |||+-|-+.| T Consensus 50 p~evvelg~flh~C-egd~Vck~~~ 73 (215) T KOG3262 50 PEEVVELGKFLHMC-EGDLVCKLTN 73 (215) T ss_pred CHHHHHHHHHHHHC-CCCEEEEECC T ss_conf 35411243455433-7755875035 No 25 >PRK10290 superoxide dismutase; Provisional Probab=27.89 E-value=44 Score=14.30 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=13.5 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9259999999999631012 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSM 19 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~ 19 (131) |+|.+++++++++.+...+ T Consensus 1 mk~~~~~~~~l~~~~~~~a 19 (173) T PRK10290 1 MKRFSLAILALVVCTGAQA 19 (173) T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9107999999999766651 No 26 >TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function. Probab=27.60 E-value=43 Score=14.34 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=12.7 Q ss_pred CCHHHHHHHHHHH--HHHHHCCCC Q ss_conf 9259999999999--631012202 Q gi|254780607|r 1 MCRKIIFALTIIA--IAFQSMALN 22 (131) Q Consensus 1 m~k~il~~~~~~~--~s~~a~a~d 22 (131) |+|++++++++++ .+.++.+.+ T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~~ 24 (288) T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAED 24 (288) T ss_pred CCHHHHHHHHHHHHHHCCHHHHCC T ss_conf 908899999999999743224304 No 27 >PRK10894 hypothetical protein; Provisional Probab=25.21 E-value=48 Score=14.06 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=15.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCC Q ss_conf 9259999999999631012202 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALN 22 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~d 22 (131) |...|++++.++++|.+|.|.. T Consensus 8 ~~~~l~l~~~ll~~S~~a~Al~ 29 (184) T PRK10894 8 LSLNLLLASSLLAASIPAFAVT 29 (184) T ss_pred CHHHHHHHHHHHHHCCHHHHCC T ss_conf 2066999999987161243155 No 28 >pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity. Probab=24.94 E-value=47 Score=14.11 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=9.4 Q ss_pred CCHHHHHHHHHHHHHHHHCC Q ss_conf 92599999999996310122 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMA 20 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a 20 (131) |||.+|..++++. +..+.| T Consensus 1 MKK~~i~~~~~l~-s~~~~A 19 (126) T pfam04076 1 MKKLAIALASALA-STSALA 19 (126) T ss_pred CCHHHHHHHHHHH-HCHHHH T ss_conf 9568999999998-467879 No 29 >PRK10554 outer membrane porin protein C; Provisional Probab=23.27 E-value=54 Score=13.76 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=12.6 Q ss_pred CCHHHHHHHHHHH-HHHHHCCCC Q ss_conf 9259999999999-631012202 Q gi|254780607|r 1 MCRKIIFALTIIA-IAFQSMALN 22 (131) Q Consensus 1 m~k~il~~~~~~~-~s~~a~a~d 22 (131) |||++|.++...+ ++.++.|.+ T Consensus 1 MKk~~LA~~i~all~ag~a~AAe 23 (373) T PRK10554 1 MKVKVLSLLVPALLVAGAANAAE 23 (373) T ss_pred CCHHHHHHHHHHHHHHCCCCEEE T ss_conf 95408999999998607531799 No 30 >PRK12789 flgI flagellar basal body P-ring protein; Reviewed Probab=23.03 E-value=54 Score=13.73 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=10.5 Q ss_pred CCHHHHHHHHHHHHHHH Q ss_conf 92599999999996310 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQ 17 (131) Q Consensus 1 m~k~il~~~~~~~~s~~ 17 (131) |+|++++.+++.++... T Consensus 1 m~~~~~~~~~~~l~~~~ 17 (367) T PRK12789 1 MIRRLLLAVLLALLAGP 17 (367) T ss_pred CHHHHHHHHHHHHHHCC T ss_conf 90899999999998553 No 31 >PRK10598 hypothetical protein; Provisional Probab=22.90 E-value=55 Score=13.72 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=19.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 92599999999996310122023788998999999999999 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALNCNETLMQADMNQCTGNSFA 41 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a~dC~~a~t~~e~~~C~~~~~~ 41 (131) |+|.++.++++++......+.=-.-..|..||+.-..+... T Consensus 1 mkk~~l~~~l~l~~llsGC~~l~qYsISEqEin~YL~~~~~ 41 (186) T PRK10598 1 MKKFLLAAALLVSGLLVGCNQLTQYTISEQEINQYLAKHNN 41 (186) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCC T ss_conf 91269999999999971435336440079999999987433 No 32 >TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Probab=22.38 E-value=56 Score=13.65 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=13.1 Q ss_pred CCHHHHHHHHHHHHHHHHC Q ss_conf 9259999999999631012 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSM 19 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~ 19 (131) |||.+++++++++....+. T Consensus 1 Mkki~l~~~~~~~~~~~~~ 19 (292) T TIGR03519 1 MKKILLLLLLLLLLTVQAF 19 (292) T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 9605788999999987787 No 33 >PRK09733 putative fimbrial protein; Provisional Probab=21.88 E-value=57 Score=13.59 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=11.8 Q ss_pred CCHHHHHHHHHHHHHHHHCC Q ss_conf 92599999999996310122 Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMA 20 (131) Q Consensus 1 m~k~il~~~~~~~~s~~a~a 20 (131) |||-|+.++..++.+..+.+ T Consensus 2 mKk~ll~~~~~~~~s~~~~A 21 (181) T PRK09733 2 FKKSLLVAGVAMILSNNVFA 21 (181) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 06889999999998666576 Done!