RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780607|ref|YP_003065020.1| hypothetical protein
CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>gnl|CDD|148561 pfam07007, DUF1311, Protein of unknown function (DUF1311).  This
           family consists of several bacterial proteins of around
           120 residues in length. Members of this family contain
           four highly conserved cysteine residues. The function of
           this family is unknown.
          Length = 92

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 28/92 (30%), Positives = 40/92 (43%)

Query: 22  NCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGSEC 81
           +C +    A+M  C     A    +L A Y+ +L  +    R     +Q AW  YR +EC
Sbjct: 1   DCAKASTTAEMAICADAELAAADAELNAAYQALLAALPADARAALRAAQRAWLKYRDAEC 60

Query: 82  AFAASGAEEGTAQSMIYANCLQGHAIERNEKL 113
            F AS    G+   + YA CL     ER  +L
Sbjct: 61  DFEASLYGGGSIAPLAYAACLARLTRERIAEL 92


>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La.  This protein is induced
           by heat shock and other stresses in E. coli, B.
           subtilis, and other species. The yeast member,
           designated PIM1, is located in the mitochondrial matrix,
           required for mitochondrial function, and also induced by
           heat shock.
          Length = 775

 Score = 28.8 bits (65), Expect = 0.44
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 40  FALVKEKLEATYKKVLEKVEKHQRELFEKSQM 71
              ++ K+    KKV EK+EK QRE + + Q+
Sbjct: 204 LLKLQNKIT---KKVEEKMEKTQREYYLREQL 232


>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
          Length = 587

 Score = 27.4 bits (61), Expect = 1.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 24  NETLMQADMNQCTGNSF---ALVKEKLEATYKKVLEKVEKHQRELFEKSQMAW 73
           N  L+   +  CTGN F   A+++ K  A   KV E++E+   E+    +M W
Sbjct: 460 NPGLLLKGLVACTGNQFCGQAIIETKARAL--KVTEELER-LVEVPRPVRMHW 509


>gnl|CDD|181540 PRK08724, fliD, flagellar capping protein; Validated.
          Length = 673

 Score = 27.1 bits (60), Expect = 1.5
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 41  ALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGSECAFAASGAE---EGTAQSMI 97
            + + KLE   ++ LEK++K Q    +++Q A+++Y G     +A  +    +G AQ   
Sbjct: 395 QIARAKLEPEERERLEKIDKAQ-AALKQAQSAFDLYSGMTEVQSAQDSMVVLDGVAQLSS 453

Query: 98  YANCLQGHAIE 108
             N ++  AIE
Sbjct: 454 NNNVIE-DAIE 463


>gnl|CDD|148927 pfam07580, Peptidase_M26_C, M26 IgA1-specific
          Metallo-endopeptidase C-terminal region.  These
          peptidases, which cleave mammalian IgA, are found in
          Gram-positive bacteria. Often found associated with
          pfam00746, they may be attached to the cell wall.
          Length = 731

 Score = 25.4 bits (56), Expect = 4.2
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 39 SFALVKEKLEATYKKVLEKVEKHQ 62
          SF  VK  L+   KK+LE  E H 
Sbjct: 65 SFDEVKANLDKLVKKLLEN-EDHI 87


>gnl|CDD|177691 PLN00060, PLN00060, meiotic recombination protein SPO11-2;
           Provisional.
          Length = 384

 Score = 24.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 32  MNQCTGNSFALVKEKLEATYKKVLEKVEKHQRELFEK 68
               +  +F  V + +E  Y+ + E     QRELF K
Sbjct: 90  TKAGSAKAFVRVWKVMEMCYQILGEGKLVTQRELFYK 126


>gnl|CDD|177544 PHA03148, PHA03148, hypothetical protein; Provisional.
          Length = 289

 Score = 24.6 bits (54), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 48  EATYKKVLEKVEKHQRELFEK 68
           EA Y  VL  V   Q E FEK
Sbjct: 165 EALYGSVLPPVSPEQIESFEK 185


>gnl|CDD|178802 PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.
          Length = 380

 Score = 24.3 bits (54), Expect = 8.9
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 42  LVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYRGSECAFAASG 87
           LV  K     ++ L +    +  L        E    ++ A AASG
Sbjct: 227 LVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADAALAASG 270


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,965,394
Number of extensions: 103880
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 20
Length of query: 131
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,201,009
Effective search space: 201648432
Effective search space used: 201648432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)