RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780607|ref|YP_003065020.1| hypothetical protein
CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>3gi7_A Secreted protein of unknown function DUF1311; NP_742474.1,
           structural genomics, joint center for structural
           genomics, JCSG; 1.85A {Pseudomonas putida KT2440} (A:)
          Length = 122

 Score = 69.4 bits (169), Expect = 2e-13
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 8/120 (6%)

Query: 15  AFQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVL------EKVEKHQRELFEK 68
           A +  +  C+          C   +  + + +L++ Y +++         E       E 
Sbjct: 2   ADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERXRDQFGDEAGLXSRIEA 61

Query: 69  SQMAWEIYRGSECAFAASGAEEGT-AQSMIYANCLQGHAIERNEKLESYLTCPEGDLLCP 127
           ++  W   R ++C       + G+ A  + + +C+   + ER E L S  +    D   P
Sbjct: 62  AEKVWSQLRDADCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQ-NSDEPAP 120


>2qpw_A PR domain zinc finger protein 2; methyltransferase,
           activator, alternative initiation, alternative splicing,
           DNA-binding, metal-binding, nucleus; 1.79A {Homo
           sapiens} PDB: 2jv0_A* (A:55-128)
          Length = 74

 Score = 26.3 bits (58), Expect = 1.4
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 59  EKHQRELFEKSQMAWEIYRGSECAFAASGAEEGTAQSMIYANC 101
           +K +R   + +   WE+Y  +         +      + Y N 
Sbjct: 9   DKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNW 51


>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase,
           nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus
           musculus} (A:143-329)
          Length = 187

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 104 GHAIERNEKLESYLTCPEGDLLC 126
           G   +R  +  S L  PEG   C
Sbjct: 65  GSYFDRGAEASSRLCTPEGWFSC 87


>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc
           finger, viral protein; HET: BOG; 2.80A {Reovirus SP}
           (B:1-145)
          Length = 145

 Score = 24.9 bits (54), Expect = 3.8
 Identities = 12/53 (22%), Positives = 19/53 (35%)

Query: 52  KKVLEKVEKHQRELFEKSQMAWEIYRGSECAFAASGAEEGTAQSMIYANCLQG 104
            + L  V +H    F K++MA E  R               +  + Y +C  G
Sbjct: 55  DEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVG 107


>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3,
          B-aggressive lymphoma protein 3, SGC, structural
          genomics consortium, alternative splicing; HET: APR;
          2.20A {Homo sapiens} (A:1-42,A:111-199)
          Length = 131

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 16 FQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQ 62
          FQSM     E  + A   Q          + +  T   VLE+ E+ +
Sbjct: 20 FQSMT--AYEMKIGAITFQVATGDI----KDVRKTVTSVLEECEQRK 60


>2ipr_A Large T antigen; DNA binding protein; 1.50A {Simian virus
          40} (A:)
          Length = 133

 Score = 24.0 bits (52), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 27 LMQADMNQCTGNSFALV--KEKLEATYKKVLEK 57
          L  A  +  T   FA+   KEK    YKK++EK
Sbjct: 20 LSHAVFSNRTLACFAIYTTKEKAALLYKKIMEK 52


>3fx7_A Putative uncharacterized protein; double helix, unknown
          function; 1.65A {Helicobacter pylori} PDB: 2gts_A (A:)
          Length = 94

 Score = 23.6 bits (51), Expect = 8.4
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 38 NSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIY 76
          + F+ V + L++T+ +  E  ++    L E+ ++  E Y
Sbjct: 48 DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86


>2yx8_A Receptor activity-modifying protein 1; transmembrane,
          disease, migraine, trafficking, folding, GPCR, CLR,
          CRLR, CGRP, endoplasmic reticulum; 2.40A {Homo sapiens}
          (A:)
          Length = 93

 Score = 23.6 bits (51), Expect = 8.6
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 23 CNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQREL 65
          C E    A + +     F +  E +  T      +  +  REL
Sbjct: 8  CQEANYGALLRELCLTQFQVDXEAVGETLWCDWGRTIRSYREL 50


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 903,431
Number of extensions: 32681
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 11
Length of query: 131
Length of database: 4,956,049
Length adjustment: 78
Effective length of query: 53
Effective length of database: 2,319,259
Effective search space: 122920727
Effective search space used: 122920727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)