RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >3gi7_A Secreted protein of unknown function DUF1311; NP_742474.1, structural genomics, joint center for structural genomics, JCSG; 1.85A {Pseudomonas putida KT2440} (A:) Length = 122 Score = 69.4 bits (169), Expect = 2e-13 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 8/120 (6%) Query: 15 AFQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVL------EKVEKHQRELFEK 68 A + + C+ C + + + +L++ Y +++ E E Sbjct: 2 ADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERXRDQFGDEAGLXSRIEA 61 Query: 69 SQMAWEIYRGSECAFAASGAEEGT-AQSMIYANCLQGHAIERNEKLESYLTCPEGDLLCP 127 ++ W R ++C + G+ A + + +C+ + ER E L S + D P Sbjct: 62 AEKVWSQLRDADCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQ-NSDEPAP 120 >2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* (A:55-128) Length = 74 Score = 26.3 bits (58), Expect = 1.4 Identities = 7/43 (16%), Positives = 15/43 (34%) Query: 59 EKHQRELFEKSQMAWEIYRGSECAFAASGAEEGTAQSMIYANC 101 +K +R + + WE+Y + + + Y N Sbjct: 9 DKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNW 51 >1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} (A:143-329) Length = 187 Score = 25.2 bits (55), Expect = 3.0 Identities = 8/23 (34%), Positives = 10/23 (43%) Query: 104 GHAIERNEKLESYLTCPEGDLLC 126 G +R + S L PEG C Sbjct: 65 GSYFDRGAEASSRLCTPEGWFSC 87 >1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} (B:1-145) Length = 145 Score = 24.9 bits (54), Expect = 3.8 Identities = 12/53 (22%), Positives = 19/53 (35%) Query: 52 KKVLEKVEKHQRELFEKSQMAWEIYRGSECAFAASGAEEGTAQSMIYANCLQG 104 + L V +H F K++MA E R + + Y +C G Sbjct: 55 DEPLVVVTEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVG 107 >3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} (A:1-42,A:111-199) Length = 131 Score = 23.7 bits (51), Expect = 8.3 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%) Query: 16 FQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQ 62 FQSM E + A Q + + T VLE+ E+ + Sbjct: 20 FQSMT--AYEMKIGAITFQVATGDI----KDVRKTVTSVLEECEQRK 60 >2ipr_A Large T antigen; DNA binding protein; 1.50A {Simian virus 40} (A:) Length = 133 Score = 24.0 bits (52), Expect = 8.4 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 27 LMQADMNQCTGNSFALV--KEKLEATYKKVLEK 57 L A + T FA+ KEK YKK++EK Sbjct: 20 LSHAVFSNRTLACFAIYTTKEKAALLYKKIMEK 52 >3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} PDB: 2gts_A (A:) Length = 94 Score = 23.6 bits (51), Expect = 8.4 Identities = 9/39 (23%), Positives = 21/39 (53%) Query: 38 NSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIY 76 + F+ V + L++T+ + E ++ L E+ ++ E Y Sbjct: 48 DKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY 86 >2yx8_A Receptor activity-modifying protein 1; transmembrane, disease, migraine, trafficking, folding, GPCR, CLR, CRLR, CGRP, endoplasmic reticulum; 2.40A {Homo sapiens} (A:) Length = 93 Score = 23.6 bits (51), Expect = 8.6 Identities = 9/43 (20%), Positives = 15/43 (34%) Query: 23 CNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKHQREL 65 C E A + + F + E + T + + REL Sbjct: 8 CQEANYGALLRELCLTQFQVDXEAVGETLWCDWGRTIRSYREL 50 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.131 0.386 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 903,431 Number of extensions: 32681 Number of successful extensions: 100 Number of sequences better than 10.0: 1 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 11 Length of query: 131 Length of database: 4,956,049 Length adjustment: 78 Effective length of query: 53 Effective length of database: 2,319,259 Effective search space: 122920727 Effective search space used: 122920727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.3 bits)