RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780607|ref|YP_003065020.1| hypothetical protein
CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 28.4 bits (63), Expect = 0.21
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 36  TGNS--FALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYR 77
           T NS      +  L     + L  V +H    F K++MA E  R
Sbjct: 70  TDNSSGAVPSESALVPYNDEPLVVVTEHAIANFTKAEMALEFNR 113


>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max)
          [TaxId: 3847]}
          Length = 250

 Score = 26.6 bits (58), Expect = 0.78
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 46 KLEATYKKVLEKVEKHQRELFEKSQMA 72
           + A Y+K +EK +K  R    + + A
Sbjct: 7  TVSADYQKAVEKAKKKLRGFIAEKRCA 33


>d1v0da_ d.4.1.7 (A:) Caspase-activated DNase, CAD (DffB, DFF40)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 245

 Score = 24.8 bits (54), Expect = 2.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 104 GHAIERNEKLESYLTCPEGDLLC 126
           G   +R  +  S L  PEG   C
Sbjct: 123 GSYFDRGAEASSRLCTPEGWFSC 145


>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
           {Escherichia coli [TaxId: 562]}
          Length = 199

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 61  HQRELFEKSQMAWEIYR 77
           H R L+++   AW+I R
Sbjct: 180 HDRFLYQRENDAWKIDR 196


>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 204

 Score = 23.3 bits (49), Expect = 6.8
 Identities = 3/17 (17%), Positives = 9/17 (52%)

Query: 61  HQRELFEKSQMAWEIYR 77
           H+R  +++ +  W+   
Sbjct: 185 HERLRYDRDEGGWKHRY 201


>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
          chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 477

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 41 ALVKEKLEATYKKVLEKVEKH 61
          +L++E LE   +K  +   KH
Sbjct: 8  SLIQEVLEVYPEKARKDRNKH 28


>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 285

 Score = 23.1 bits (49), Expect = 8.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 39  SFALVKEKLEATYKKVLEKVEKH 61
            F  V++++ A Y  +  KVE H
Sbjct: 258 DFLTVEQRMRACYYSLASKVEGH 280


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,039
Number of extensions: 17443
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 14
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)