HHsearch alignment for GI: 254780608 and conserved domain: PRK00130

>PRK00130 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.99  E-value=0.0036  Score=40.03  Aligned_cols=72  Identities=21%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus         2 ~G~l~i~KP~g~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvL~v~~G~a--TK~~~~~~--~~~K~Y~a   68 (289)
T PRK00130          2 NGVINVYKPKGMTSFD-------VVRKIRKIAK--IKKVGHTGTLDPLASGVLPVCLGKA--TKIVDYIM--EGKKVYRV   68 (289)
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC--CCCEEEEE
T ss_conf             7799960899999899-------9999999848--8855778467985604289997877--61436767--99907999


Q ss_pred             CCC-CC
Q ss_conf             134-56
Q gi|254780608|r  186 LVW-GI  190 (346)
Q Consensus       186 iv~-G~  190 (346)
T Consensus        69 ~~~lG~   74 (289)
T PRK00130         69 ELKLGT   74 (289)
T ss_pred             EEEECC
T ss_conf             999787