HHsearch alignment for GI: 254780608 and conserved domain: PRK00130
>PRK00130 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.99 E-value=0.0036 Score=40.03 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 2 ~G~l~i~KP~g~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvL~v~~G~a--TK~~~~~~--~~~K~Y~a 68 (289)
T PRK00130 2 NGVINVYKPKGMTSFD-------VVRKIRKIAK--IKKVGHTGTLDPLASGVLPVCLGKA--TKIVDYIM--EGKKVYRV 68 (289)
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC--CCCEEEEE
T ss_conf 7799960899999899-------9999999848--8855778467985604289997877--61436767--99907999
Q ss_pred CCC-CC
Q ss_conf 134-56
Q gi|254780608|r 186 LVW-GI 190 (346)
Q Consensus 186 iv~-G~ 190 (346)
T Consensus 69 ~~~lG~ 74 (289)
T PRK00130 69 ELKLGT 74 (289)
T ss_pred EEEECC
T ss_conf 999787