HHsearch alignment for GI: 254780608 and conserved domain: PRK05033
>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.30 E-value=0.013 Score=36.51 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=46.5
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 12 ~Gil~idKP~g~TS~~-------~v~~~kk~~~--~kKvGH~GTLDP~AtGvL~i~~G~-a-TK~~~~~~~--~~K~Y~~ 78 (314)
T PRK05033 12 NGVLLLDKPQGMSSND-------ALQKVKRIYN--ANKAGHTGALDPLATGMLPICLGE-A-TKFSQFLLD--SDKRYRV 78 (314)
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECH-H-HHHHHHHCC--CCCEEEE
T ss_conf 6799981599999899-------9999999858--885687857797560218999888-8-704088668--9917999
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
T Consensus 79 ~~~ 81 (314)
T PRK05033 79 IAK 81 (314)
T ss_pred EEE
T ss_conf 999