HHsearch alignment for GI: 254780608 and conserved domain: PRK05033

>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.30  E-value=0.013  Score=36.51  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=46.5

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus        12 ~Gil~idKP~g~TS~~-------~v~~~kk~~~--~kKvGH~GTLDP~AtGvL~i~~G~-a-TK~~~~~~~--~~K~Y~~   78 (314)
T PRK05033         12 NGVLLLDKPQGMSSND-------ALQKVKRIYN--ANKAGHTGALDPLATGMLPICLGE-A-TKFSQFLLD--SDKRYRV   78 (314)
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECH-H-HHHHHHHCC--CCCEEEE
T ss_conf             6799981599999899-------9999999858--885687857797560218999888-8-704088668--9917999


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
T Consensus        79 ~~~   81 (314)
T PRK05033         79 IAK   81 (314)
T ss_pred             EEE
T ss_conf             999