HHsearch alignment for GI: 254780608 and conserved domain: PRK10158
>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional.
Probab=100.00 E-value=0 Score=415.64 Aligned_cols=208 Identities=31% Similarity=0.461 Sum_probs=169.6
Q ss_pred CCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
Q ss_conf 34543078617856884176531122357853323320110111110013335445342224046212310122210233
Q gi|254780608|r 95 DFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESF 174 (346)
Q Consensus 95 ~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f 174 (346)
T Consensus 10 ~~~~l~IlyED~~llvvnKP~gl~~~pg~~~-~~~~~~~~~~~~-~~~~~~~vHRLDr~TSGlll~AK~~~a~~~l~~~f 87 (219)
T PRK10158 10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLE-EHKDSVMTRIQR-DYPQAESVHRLDMATSGVIVVALTKAAERELKRQF 87 (219)
T ss_pred CCCCCCEEEECCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 9999568997999999999999820799764-562069998774-07866634778999753699978999999998878
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 33221112000134565410000000122346554321113355555553034301013432024420457861237899
Q gi|254780608|r 175 RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQ 254 (346)
Q Consensus 175 ~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQ 254 (346)
T Consensus 88 ~~r~v~K~YlA~v~G~~~~~~g~i~~~l~~~~~~~~~~-~---~~~~~gk~a~t~~~~l~~~~~~~~lv~l~p~TGRtHQ 163 (219)
T PRK10158 88 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ-K---VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQ 163 (219)
T ss_pred HHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCE-E---EECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCHHH
T ss_conf 73746737999983686643561124525047777616-9---9724674121589999973898599999866685189
Q ss_pred HHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCC
Q ss_conf 99999963980004644466522100013446241311000437588964-99983997
Q gi|254780608|r 255 LRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLP 312 (346)
Q Consensus 255 IRvhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP 312 (346)
T Consensus 164 IRvhla~lG~PIvGD~~Yg~~~~~----~~~~rl~LHA~~L~f~HP~t~~~~~~~aP~~ 218 (219)
T PRK10158 164 LRVHMLALGHPILGDRFYASPEAR----AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 (219)
T ss_pred HHHHHHHCCCCEECCCCCCCCCCC----CCCCCHHHHCCEEEEECCCCCCEEEEECCCC
T ss_conf 999999879927478777884324----6775830410875858829999899967999