HHsearch alignment for GI: 254780608 and conserved domain: PRK10158

>PRK10158 23S rRNA/tRNA pseudouridine synthase A; Provisional.
Probab=100.00  E-value=0  Score=415.64  Aligned_cols=208  Identities=31%  Similarity=0.461  Sum_probs=169.6

Q ss_pred             CCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
Q ss_conf             34543078617856884176531122357853323320110111110013335445342224046212310122210233
Q gi|254780608|r   95 DFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESF  174 (346)
Q Consensus        95 ~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f  174 (346)
T Consensus        10 ~~~~l~IlyED~~llvvnKP~gl~~~pg~~~-~~~~~~~~~~~~-~~~~~~~vHRLDr~TSGlll~AK~~~a~~~l~~~f   87 (219)
T PRK10158         10 QEPWLVILYQDDHIMVVNKPSGLLSVPGRLE-EHKDSVMTRIQR-DYPQAESVHRLDMATSGVIVVALTKAAERELKRQF   87 (219)
T ss_pred             CCCCCCEEEECCCEEEEECCCCCCCCCCCCC-CCCHHHHHHHHH-CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             9999568997999999999999820799764-562069998774-07866634778999753699978999999998878


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf             33221112000134565410000000122346554321113355555553034301013432024420457861237899
Q gi|254780608|r  175 RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQ  254 (346)
Q Consensus       175 ~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQ  254 (346)
T Consensus        88 ~~r~v~K~YlA~v~G~~~~~~g~i~~~l~~~~~~~~~~-~---~~~~~gk~a~t~~~~l~~~~~~~~lv~l~p~TGRtHQ  163 (219)
T PRK10158         88 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQ-K---VCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQ  163 (219)
T ss_pred             HHCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCE-E---EECCCCCCCCEEEEEEEECCCCEEEEEEEECCCCHHH
T ss_conf             73746737999983686643561124525047777616-9---9724674121589999973898599999866685189


Q ss_pred             HHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCC
Q ss_conf             99999963980004644466522100013446241311000437588964-99983997
Q gi|254780608|r  255 LRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLP  312 (346)
Q Consensus       255 IRvhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP  312 (346)
T Consensus       164 IRvhla~lG~PIvGD~~Yg~~~~~----~~~~rl~LHA~~L~f~HP~t~~~~~~~aP~~  218 (219)
T PRK10158        164 LRVHMLALGHPILGDRFYASPEAR----AMAPRLLLHAEMLTITHPAYGNSMTFKAPAD  218 (219)
T ss_pred             HHHHHHHCCCCEECCCCCCCCCCC----CCCCCHHHHCCEEEEECCCCCCEEEEECCCC
T ss_conf             999999879927478777884324----6775830410875858829999899967999