HHsearch alignment for GI: 254780608 and conserved domain: PRK10839
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional.
Probab=99.91 E-value=9.6e-24 Score=169.77 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=134.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 668999998767889899999998499038878845-1121179988999356554222332222345543343222345
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFL 97 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (346)
T Consensus 1 mRL~K~La~~g-~~SRR~ae~lI~~GrV~VNg~~v~~~~~~V~~~~~v~vdg~~i------------~------------ 55 (231)
T PRK10839 1 MRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVKNAAFKLLPEHDVAYDGNPL------------A------------ 55 (231)
T ss_pred CCHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEE------------C------------
T ss_conf 93789998878-9569999999987979999999145880849998699919586------------1------------
Q ss_pred CCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCC
Q ss_conf 43078617856884176531122357853323320110111110013335445342224046212310122210233332
Q gi|254780608|r 98 KSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMR 177 (346)
Q Consensus 98 ~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~ 177 (346)
T Consensus 56 ----~~~~~~y~~lnKP~G~v~s~~d~~~~~~~~~l~---~~~~~~l~~vGRLD~ds~GLlllTnDg~l~~~l~~--P~~ 126 (231)
T PRK10839 56 ----QQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLD---EPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRH 126 (231)
T ss_pred ----CCCCCEEEEEECCCCCCCCCCCCCCCCEEEECC---CCCCCCEEEEECCCCCCCCEEEECCCHHHHHHCCC--CCC
T ss_conf ----466868999989987534788999972698637---65556357700468898776997688899953518--768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 21112000134565410000000122346554321113355555553034301013432024420457861237899999
Q gi|254780608|r 178 RIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRV 257 (346)
Q Consensus 178 ~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRv 257 (346)
T Consensus 127 ~i~k~Y~V~v~~~i~~~~--l~~l~-~-----G--v~i-~~~~~~~~~~~--v~~~---~-~-~~~~i~l~eGk~rqIRr 188 (231)
T PRK10839 127 HCEKTYLVTLESPVADDT--AEQFA-K-----G--VQL-HNEKDLTKPAV--LEVI---T-P-TQVRLTISEGRYHQVKR 188 (231)
T ss_pred CCCEEEEEEECCCCCHHH--HHHHH-C-----C--CEE-CCEECCEEEEE--EEEC---C-C-CEEEEEEECCCCHHHHH
T ss_conf 997899999898799999--99996-7-----9--698-78231160369--9984---8-9-69999996687679999
Q ss_pred HHHHCCCCEECCCC
Q ss_conf 99963980004644
Q gi|254780608|r 258 HALHMGCPIVGDHK 271 (346)
Q Consensus 258 hl~~~g~PivGD~~ 271 (346)
T Consensus 189 mf~~~g~~V~~L~R 202 (231)
T PRK10839 189 MFAAVGNRVVELHR 202 (231)
T ss_pred HHHHCCCEEEEEEE
T ss_conf 99985998989999