HHsearch alignment for GI: 254780608 and conserved domain: PRK11025

>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=100.00  E-value=0  Score=585.73  Aligned_cols=308  Identities=33%  Similarity=0.514  Sum_probs=256.2

Q ss_pred             CCCEEEEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             68304999841136866899999876788989999999849903887884511211799889993565542223322223
Q gi|254780608|r    4 MTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKI   83 (346)
Q Consensus         4 M~~~~~~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~   83 (346)
T Consensus         5 ~~~v~~i~V~~~~~G~RLD~fL~~~l~~~srs~i~klir~g~V~VNg~~vk~~~~l~~GD~I~i~~~~~~~~~~~p~---   81 (317)
T PRK11025          5 TPSVKIVAISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAV---   81 (317)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCCCCCCCEEEECCCCCCCCCCCCC---
T ss_conf             99627999893007975999999756626999999999869989999995710465799999988866564445778---


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             45543343222345430786178568841765311223578533233201101111100133354453422240462123
Q gi|254780608|r   84 LDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVART  163 (346)
Q Consensus        84 ~~~~~~~~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~  163 (346)
T Consensus        82 -~~--~~~-~~~~l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~~~~~l~~~~~-~~~~~~iVHRLDr~TSGllv~AK~  156 (317)
T PRK11025         82 -SP--HLQ-KVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKK  156 (317)
T ss_pred             -CC--CCC-CCCCCCCEEEEECCCEEEEECCCCCEECCCCCCHHHHHHHHHHHCC-CCCCCCCEECCCCCCCEEEEEECC
T ss_conf             -85--511-0024556079947988999774356226888731689999997588-887678131269987426887168


Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEE
Q ss_conf             10122210233332211120001345654100000001223465543211133555555530343010134320244204
Q gi|254780608|r  164 RAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWL  243 (346)
Q Consensus       164 ~~a~~~l~~~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv  243 (346)
T Consensus       157 ~~a~~~l~~~f~~r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~---~~~~~gk~a~T~~~v~~~~~-~~sLv  232 (317)
T PRK11025        157 RSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIV---RVSQEGKPSETRFKVEERYA-FATLV  232 (317)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEE---ECCCCCCCCHHHHHHHHHCC-CCCCE
T ss_conf             999999999997372575599998276367788796100046676764566---22777776410144676527-86400


Q ss_pred             EEEECHHHHHHHHHHHHHCCCCEECCCCCCCCCC-CHHCCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHHHHH
Q ss_conf             5786123789999999963980004644466522-10001344624131100043758896-499983997899999998
Q gi|254780608|r  244 EMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFK-GNFTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTWDS  321 (346)
Q Consensus       244 ~~~l~TGR~HQIRvhl~~~g~PivGD~~Yg~~~~-~~~~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~l~~  321 (346)
T Consensus       233 ~~~~~TGRtHQIRvHla~~G~PI~GD~~YG~~~~~~~~~~~~~~R~~LHA~~L~F~HP~t~~~~~f~aplP~d~~~~l~~  312 (317)
T PRK11025        233 RASPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLTGTGLNRLFLHAAALKFTHPGTGEVMRIEAPLDNQLKRCLQK  312 (317)
T ss_pred             EEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             57558075899999998779968385202874212023036885543521865718889998699982684999999999


Q ss_pred             HC
Q ss_conf             08
Q gi|254780608|r  322 LG  323 (346)
Q Consensus       322 l~  323 (346)
T Consensus       313 Lr  314 (317)
T PRK11025        313 LR  314 (317)
T ss_pred             HH
T ss_conf             86