HHsearch alignment for GI: 254780608 and conserved domain: PRK11025
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional.
Probab=100.00 E-value=0 Score=585.73 Aligned_cols=308 Identities=33% Similarity=0.514 Sum_probs=256.2
Q ss_pred CCCEEEEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 68304999841136866899999876788989999999849903887884511211799889993565542223322223
Q gi|254780608|r 4 MTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKI 83 (346)
Q Consensus 4 M~~~~~~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~ 83 (346)
T Consensus 5 ~~~v~~i~V~~~~~G~RLD~fL~~~l~~~srs~i~klir~g~V~VNg~~vk~~~~l~~GD~I~i~~~~~~~~~~~p~--- 81 (317)
T PRK11025 5 TPSVKIVAISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAV--- 81 (317)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCCCCCCCEEEECCCCCCCCCCCCC---
T ss_conf 99627999893007975999999756626999999999869989999995710465799999988866564445778---
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 45543343222345430786178568841765311223578533233201101111100133354453422240462123
Q gi|254780608|r 84 LDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVART 163 (346)
Q Consensus 84 ~~~~~~~~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~ 163 (346)
T Consensus 82 -~~--~~~-~~~~l~~~IlyED~~llvvnKPaGl~vhp~~~~~~~~~~~l~~~~~-~~~~~~iVHRLDr~TSGllv~AK~ 156 (317)
T PRK11025 82 -SP--HLQ-KVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKK 156 (317)
T ss_pred -CC--CCC-CCCCCCCEEEEECCCEEEEECCCCCEECCCCCCHHHHHHHHHHHCC-CCCCCCCEECCCCCCCEEEEEECC
T ss_conf -85--511-0024556079947988999774356226888731689999997588-887678131269987426887168
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEE
Q ss_conf 10122210233332211120001345654100000001223465543211133555555530343010134320244204
Q gi|254780608|r 164 RAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWL 243 (346)
Q Consensus 164 ~~a~~~l~~~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv 243 (346)
T Consensus 157 ~~a~~~l~~~f~~r~v~K~Y~Alv~G~~~~~~~~i~~pl~~~~~~~~~~~~---~~~~~gk~a~T~~~v~~~~~-~~sLv 232 (317)
T PRK11025 157 RSALRSLHEQLREKGMQKDYLALVRGQWQSHVKVVQAPLLKNILQSGERIV---RVSQEGKPSETRFKVEERYA-FATLV 232 (317)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEE---ECCCCCCCCHHHHHHHHHCC-CCCCE
T ss_conf 999999999997372575599998276367788796100046676764566---22777776410144676527-86400
Q ss_pred EEEECHHHHHHHHHHHHHCCCCEECCCCCCCCCC-CHHCCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHHHHH
Q ss_conf 5786123789999999963980004644466522-10001344624131100043758896-499983997899999998
Q gi|254780608|r 244 EMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFK-GNFTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTWDS 321 (346)
Q Consensus 244 ~~~l~TGR~HQIRvhl~~~g~PivGD~~Yg~~~~-~~~~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~l~~ 321 (346)
T Consensus 233 ~~~~~TGRtHQIRvHla~~G~PI~GD~~YG~~~~~~~~~~~~~~R~~LHA~~L~F~HP~t~~~~~f~aplP~d~~~~l~~ 312 (317)
T PRK11025 233 RASPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLTGTGLNRLFLHAAALKFTHPGTGEVMRIEAPLDNQLKRCLQK 312 (317)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 57558075899999998779968385202874212023036885543521865718889998699982684999999999
Q ss_pred HC
Q ss_conf 08
Q gi|254780608|r 322 LG 323 (346)
Q Consensus 322 l~ 323 (346)
T Consensus 313 Lr 314 (317)
T PRK11025 313 LR 314 (317)
T ss_pred HH
T ss_conf 86