HHsearch alignment for GI: 254780608 and conserved domain: PRK11112
>PRK11112 tRNA pseudouridine synthase C; Provisional.
Probab=100.00 E-value=0 Score=461.38 Aligned_cols=232 Identities=28% Similarity=0.362 Sum_probs=184.7
Q ss_pred CEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 30786178568841765311223578533233201101111100133354453422240462123101222102333322
Q gi|254780608|r 99 SILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRR 178 (346)
Q Consensus 99 ~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~ 178 (346)
T Consensus 2 L~IlyED~~llVVnKPaGl~vh~~~~~~~~~~~~~~~l~~~~~~~~~~VHRLDr~TSGllv~AK~~~a~~~L~~~f~~~~ 81 (257)
T PRK11112 2 LEILYQDEWLVAVNKPAGWLVHRSWLDRHETVFVMQTVRDQIGQHVFTAHRLDRPTSGVLLMALSSEAARLLAQQFEQHQ 81 (257)
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 57999669899999999986479988878519999999875277653205778987517999689999999999987576
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH----------HCCCCEEEEEEC
Q ss_conf 1112000134565410000000122346554321113355555553034301013432----------024420457861
Q gi|254780608|r 179 IQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCF----------AQKFCWLEMQPH 248 (346)
Q Consensus 179 v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~----------~~~~slv~~~l~ 248 (346)
T Consensus 82 v~K~Y~Alv~G~~~-~~~~i~~~l~~~~~~~~---~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~~~~~~~sLv~~~p~ 157 (257)
T PRK11112 82 IQKTYHAIVRGWLM-EEAVLDYPLKEELDKIA---DKFAREDKEPQPAVTHYRGLATVEMPVATGRYPTTRYSLVELEPK 157 (257)
T ss_pred CCEEEEEEEEEECC-CCCEEEEECCCCCCCCC---CEEECCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 86399999964538-99768524344666556---313022898636345411102687510123246785799999648
Q ss_pred HHHHHHHHHHHHHCCCCEECCCCCCCCCCCH--HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHHCCC
Q ss_conf 2378999999996398000464446652210--0013446241311000437588964-999839978999999980898
Q gi|254780608|r 249 TGRTHQLRVHALHMGCPIVGDHKYCANFKGN--FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSLGFK 325 (346)
Q Consensus 249 TGR~HQIRvhl~~~g~PivGD~~Yg~~~~~~--~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l~~~ 325 (346)
T Consensus 158 TGRtHQIRvHla~lGhPIvGD~~YG~~~~~~~~~~~~~~~R~~LHA~~L~F~HP~tge~~~~~AplP~d~~~ll~~~g~~ 237 (257)
T PRK11112 158 TGRKHQLRRHMAHLRHPIIGDSKHGDLRQNRSFAEHFGCSRLMLHASELSLTHPFTGEPLTITAGLDETWQQLLSQFGWR 237 (257)
T ss_pred CCCHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHCCCCCCHHHCCCCCEEECCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 68529999999987996757725587544601454239963655018347578599986999816859999999976998
Q ss_pred CCCCHHHHC
Q ss_conf 752001100
Q gi|254780608|r 326 YDRNLYIKR 334 (346)
Q Consensus 326 ~d~~~~~~~ 334 (346)
T Consensus 238 ~~~~~~~~~ 246 (257)
T PRK11112 238 GLLPENERV 246 (257)
T ss_pred CCCCHHCCC
T ss_conf 889311062