HHsearch alignment for GI: 254780608 and conserved domain: TIGR00005
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases. In Escherichia coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917. RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homologue from E. coli outside this family, TruC (Q46918 from SWISSPROT), modifies uracil-65 in transfer RNAs to pseudouridine. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis.
Probab=100.00 E-value=0 Score=564.61 Aligned_cols=297 Identities=31% Similarity=0.464 Sum_probs=244.3
Q ss_pred HHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC--CCCCCCCCCEEE-EECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11368668999998767889899999998499038878845--112117998899-935655422233222234554334
Q gi|254780608|r 14 NDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK--FNNRIQSGQVVR-IPPVINALNHIIKEQKILDSSVNL 90 (346)
Q Consensus 14 ~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk--~~~~v~~GD~I~-i~~~~~~~~~~~~~~~~~~~~~~~ 90 (346)
T Consensus 1 ~~~~g~Rld~~L~~~l~~~sr~~~~~~i~~G~V~vN~~~~~~~~~~~~~~g~~~~~v~~~~~~----------~~~~~~~ 70 (337)
T TIGR00005 1 EEQAGQRLDDFLASLLPDLSRSRIQKLIENGQVKVNKGKVTANPKLKIKDGDRITPVRVPEEQ----------EELEVPV 70 (337)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEECEECCCCC----------CCCCCCC
T ss_conf 974302699999998367888899999874968963764256743052387466010014643----------3235766
Q ss_pred CCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCCCCC-CCC-CHHHCCCCC-----CCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 32223454307861785688417653112235785332-332-011011111-----00133354453422240462123
Q gi|254780608|r 91 TKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYH-IDG-FLKSWVDSK-----GQKPRLTHRLDQETSGILVVART 163 (346)
Q Consensus 91 ~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~-~~~-~l~~~~~~~-----~~~~~lVHRLDr~TSGlll~AK~ 163 (346)
T Consensus 71 ~~~p~~l~l~IlfEDe~i~vinKP~G~~vHP~~~~~~~Tv~~~L~~~~~~~~~gig~~~~~~~vHRLD~dTSGl~~vAK~ 150 (337)
T TIGR00005 71 QDIPADLKLDILFEDEDILVINKPSGLVVHPGGGNSFGTVLNALLAHCPERLSGIGGVFRVGIVHRLDRDTSGLMVVAKT 150 (337)
T ss_pred CCCCCCCCCEEEEECCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEC
T ss_conf 56734221137875083899978987564488888735489999986476643457612361355247787258999708
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH--HHCCC
Q ss_conf 10122210233332211120001345654-1000000012234655432111335555555303430101343--20244
Q gi|254780608|r 164 RAAAQHLTESFRMRRIQKIYWSLVWGIPK-NKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDC--FAQKF 240 (346)
Q Consensus 164 ~~a~~~l~~~f~~~~v~K~Y~Aiv~G~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~--~~~~~ 240 (346)
T Consensus 151 ~~A~~~L~~ql~~~~~~k~Y~A~V~G~~~~~~~~~~~~P~~r~~~~~~~~-~v~~~~~~~GK~A~T~f~~~~~~A~~~-~ 228 (337)
T TIGR00005 151 RLALRELQRQLKERTVTKEYVALVHGEFDLSKKGTVDAPLGRVPNNRGKM-AVAPSSEKEGKPAVTHFKVLERIADGN-A 228 (337)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEE-EEEECCCCCCCEEEEEEEEEHHHCCCC-C
T ss_conf 68999999999838611789999831768876447806532368860268-997678888961234212100110445-2
Q ss_pred CEEEEEECHHHHHHHHHHHHHCCCCEECCCCCCCCCCC-H----HCCCCCCCHHHHHHHHEEECCCC---------CE-E
Q ss_conf 20457861237899999999639800046444665221-0----00134462413110004375889---------64-9
Q gi|254780608|r 241 CWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKG-N----FTSPIQNKLYLHARYMDLPHPEG---------GR-L 305 (346)
Q Consensus 241 slv~~~l~TGR~HQIRvhl~~~g~PivGD~~Yg~~~~~-~----~~~~~~~r~~LHa~~l~f~hp~~---------~~-~ 305 (346)
T Consensus 229 sl~~~~L~TGRTHQIRVHl~~~ghPl~gD~~YG~~~~~~~~~g~~~~~~~~~q~LHA~~l~f~HP~~~~W~~~~~~ge~~ 308 (337)
T TIGR00005 229 SLVECELETGRTHQIRVHLQYLGHPLAGDPLYGNKPKKGNNLGLEGLLNFDRQALHAYELGFIHPATSSWYHNETKGELL 308 (337)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 18999853489738999999716853143256888878321451003675402311455310378886621447787143
Q ss_pred E-----------EECCCCHHHHHHHHHH
Q ss_conf 9-----------9839978999999980
Q gi|254780608|r 306 Q-----------ITAPLPAHMVKTWDSL 322 (346)
Q Consensus 306 ~-----------~~aplP~~f~~~l~~l 322 (346)
T Consensus 309 ~~~~C~~Ce~~~~~AP~p~~~~~~l~~L 336 (337)
T TIGR00005 309 EGKKCSECETELFEAPLPADLKELLEAL 336 (337)
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHC
T ss_conf 2650532476211058807999999960