HHsearch alignment for GI: 254780608 and conserved domain: TIGR01621
>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621; InterPro: IPR006508 These sequences represent a clade within the pseudouridine synthase superfamily. The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences in this family are most closely related to RluA ; only Neisseria does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity..
Probab=100.00 E-value=0 Score=309.49 Aligned_cols=198 Identities=30% Similarity=0.409 Sum_probs=162.1
Q ss_pred CEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 30786178568841765311223578533233201101111100133354453422240462123101222102333322
Q gi|254780608|r 99 SILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRR 178 (346)
Q Consensus 99 ~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~ 178 (346)
T Consensus 2 ~eilf~H~DF~~INK~~giSVHkD~getg-L~~~vA~Q--lgv~~vwLvHRLDK~TSGiLllAlNaesAselS~~Fa~~k 78 (222)
T TIGR01621 2 LEILFRHSDFVLINKSEGISVHKDDGETG-LLREVAKQ--LGVEKVWLVHRLDKVTSGILLLALNAESASELSRLFAKKK 78 (222)
T ss_pred CEEEEECCCEEEEECCCCEEEEECCCCHH-HHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHCHHHHHHHHHHHHCCE
T ss_conf 05775368678986799832772571113-89999998--1898089987000344689998604789999987652170
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHH
Q ss_conf 11120001345654100000001223465543211133555555530343010134320244204578612378999999
Q gi|254780608|r 179 IQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVH 258 (346)
Q Consensus 179 v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvh 258 (346)
T Consensus 79 i~KtYLAls~~KPkKKQGlI~GdMeks----R~g~WKL~~~~--eNpAiTrF~S~s~a~-~lRLFilkPhTGKTHQlRVA 151 (222)
T TIGR01621 79 IKKTYLALSDKKPKKKQGLIIGDMEKS----RRGAWKLVRSK--ENPAITRFESVSIAE-KLRLFILKPHTGKTHQLRVA 151 (222)
T ss_pred EEEEEEECCCCCCCCCCCEEECCHHHH----HCCCCHHCCCC--CCCEECCEEEEEECC-CCCEEEECCCCCCHHHHHHH
T ss_conf 666776313689874442025571242----00010002789--896011124565238-88637556899963788788
Q ss_pred HHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCEEEEECCCCH
Q ss_conf 9963980004644466522100013446241311000437588964999839978
Q gi|254780608|r 259 ALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGRLQITAPLPA 313 (346)
Q Consensus 259 l~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~~~~~aplP~ 313 (346)
T Consensus 152 mKSlGSpIlGD~lYg~n~~e------sdr~yLhA~~l~FdY-~n~~i~~~c~p~q 199 (222)
T TIGR01621 152 MKSLGSPILGDSLYGKNADE------SDRTYLHAFKLRFDY-QNEVIEVVCDPKQ 199 (222)
T ss_pred HHHCCCCCCCCCCCCCCCCH------HHHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf 87727630056767886421------332422222100100-4758899865424