HHsearch alignment for GI: 254780608 and conserved domain: TIGR03069
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=98.14 E-value=5.6e-06 Score=57.75 Aligned_cols=54 Identities=15% Similarity=0.342 Sum_probs=48.0
Q ss_pred HCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECC
Q ss_conf 36866899999876788989999999849903887884-51121179988999356
Q gi|254780608|r 16 EENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPV 70 (346)
Q Consensus 16 ~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~ 70 (346)
T Consensus 181 vsSlRLDavvs~~~-~~SRska~~lI~~g~V~vN~~~v~~~s~~v~~gDiiSvRG~ 235 (257)
T TIGR03069 181 EASLRIDAIASAGF-GLSRSKIVDQIKAGRLRLNWKTVTQPSRELKVGDRLQLRGK 235 (257)
T ss_pred ECCCCHHHHHHHHH-CCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEEECC
T ss_conf 21213899999886-65799999998849689899990578756689999999067