>cd02554 PseudoU_synth_RluF PseudoU_synth_RluF_like: Pseudouridine synthase, Escherichia coli RluF like. This group is comprised of bacterial proteins similar to Escherichia coli RluF. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluF makes psi2604 in 23S RNA. psi2604 has only been detected in E. coli. It is absent from other eubacteria despite a precursor U at that site and from eukarya and archea which lack a precursor U at that site.

Probab=99.47 E-value=1e-13 Score=106.58 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=89.6 Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 68841765311223578533233201101111100133354453422240462123101222102333322111200013 Q gi|254780608|r 108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLV 187 (346) Q Consensus 108 livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv 187 (346) T Consensus 2 YillnKP~G~v~s~~~~~~~~~~~~l~-----~~~rl~~vGRLD~~s~GLLLlTNDg~l~~~L~h--P~~~i~k~Y~V~~ 74 (164) T cd02554 2 YIAYNKPVGIDCTLERADEDNIIDFVN-----PPPRIFPIGRLDKDSEGLILLTNDGDLVNKILH--ADNNHEKEYLVTV 74 (164) T ss_pred EEEEECCCCEEECCCCCCCCCEEEECC-----CCCCEEECCCCCCCCCCEEEEECCHHHHHHHCC--CCCCCCCEEEEEE T ss_conf 999989998283878999996699748-----867778886789998565999578899976219--9888962999999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEE Q ss_conf 45654100000001223465543211133555555530343010134320244204578612378999999996398000 Q gi|254780608|r 188 WGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIV 267 (346) Q Consensus 188 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Piv 267 (346) T Consensus 75 ~~~i~~~~--l~~-l~~-G----i~i-------~~~~~~~~~v~~~---~~--~~~~i~l~eGknrqIRrmf~~~g~~V~ 134 (164) T cd02554 75 NKPITDEF--IEG-MSN-G----VVI-------LGTVTKPCKVERL---AK--DKFRIVLTQGLNRQIRRMCEALGYRVT 134 (164) T ss_pred CCCCCHHH--HHH-HHC-C----EEE-------CCEEEECEEEEEE---CC--CEEEEEEEECCCHHHHHHHHHCCCEEE T ss_conf 56699999--998-747-8----598-------9889802199994---79--849999992674899999998699884 Q ss_pred CCCC Q ss_conf 4644 Q gi|254780608|r 268 GDHK 271 (346) Q Consensus 268 GD~~ 271 (346) T Consensus 135 ~L~R 138 (164) T cd02554 135 DLKR 138 (164) T ss_pred EEEE T ss_conf 8999

HHsearch alignment for GI: 254780608 and conserved domain: cd02554