>cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site.

Probab=99.59 E-value=4.7e-15 Score=114.99 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=94.8 Q ss_pred EEEECCCCCCEEECC-CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC Q ss_conf 688417653112235-7853323320110111110013335445342224046212310122210233332211120001 Q gi|254780608|r 108 IYVFNKPAGISVQGG-SGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346) Q Consensus 108 livinKPaGl~vhp~-~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346) T Consensus 2 ~illnKP~G~v~s~~d~~~r~tv~dll~~---~~~~rl~~vGRLD~ds~GLLLlTnDG~l~~~l~h--P~~~i~k~Y~V~ 76 (167) T cd02556 2 VLIYHKPEGLICTRKDPKGRPTVFDLLPK---LGIPRWISVGRLDLNTEGLLLFTNDGELANRLMH--PSNEIEREYAVR 76 (167) T ss_pred EEEEECCCCEEECCCCCCCCCCHHHHCCC---CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCC--CCCCCCEEEEEE T ss_conf 89998999989786299889757896553---3555723641389576785999278367576409--877885799999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCE Q ss_conf 34565410000000122346554321113355555553034301013432024420457861237899999999639800 Q gi|254780608|r 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPI 266 (346) Q Consensus 187 v~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Pi 266 (346) T Consensus 77 v~~~~~~~~--l~~-l~~-G------v---~i--~~~~~~~~~v~~~~~~-~~~~~~~i~l~eGk~rqIRrmf~~~g~~V 140 (167) T cd02556 77 VFGQVTDEQ--LKS-LKK-G------V---EL--EDGFAGFKSIQLEGGE-GKNSWYRVTLREGRNREVRRLWEAFGLQV 140 (167) T ss_pred ECCCCCHHH--HHH-HHC-C------C---EE--CCEEEEEEEEEEECCC-CCCEEEEEEEECCCHHHHHHHHHHCCCEE T ss_conf 758999999--999-877-9------7---87--9988400699996267-99679999997694689999999869989 Q ss_pred ECCCC Q ss_conf 04644 Q gi|254780608|r 267 VGDHK 271 (346) Q Consensus 267 vGD~~ 271 (346) T Consensus 141 ~~L~R 145 (167) T cd02556 141 SRLIR 145 (167) T ss_pred EEEEE T ss_conf 58999

HHsearch alignment for GI: 254780608 and conserved domain: cd02556