HHsearch alignment for GI: 254780608 and conserved domain: cd02573
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=95.31 E-value=0.0087 Score=37.63 Aligned_cols=69 Identities=25% Similarity=0.367 Sum_probs=45.8
Q ss_pred CEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 56884176531122357853323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r 107 KIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346)
Q Consensus 107 ~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346)
T Consensus 1 G~l~i~Kp~g~tS~~-------~v~~~k~~~~~--kKvGH~GTLDP~AtGvL~i~~g~-aT-Kl~~~~~~--~~K~Y~~~ 67 (277)
T cd02573 1 GILLLDKPAGLTSHD-------VVQKVRRLLGT--KKVGHTGTLDPLATGVLPIALGE-AT-KLSQYLLD--ADKTYRAT 67 (277)
T ss_pred CEEEEECCCCCCHHH-------HHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEEECH-HH-HHHHHHCC--CCCEEEEE
T ss_conf 989996799999899-------99999998588--85563757797660337899888-87-05278678--99179999
Q ss_pred CC
Q ss_conf 34
Q gi|254780608|r 187 VW 188 (346)
Q Consensus 187 v~ 188 (346)
T Consensus 68 ~~ 69 (277)
T cd02573 68 VR 69 (277)
T ss_pred EE
T ss_conf 99