HHsearch alignment for GI: 254780608 and conserved domain: smart00363
>smart00363 S4 S4 RNA-binding domain.
Probab=98.50 E-value=2.9e-07 Score=65.86 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=46.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEEC
Q ss_conf 66899999876788989999999849903887884-5112117998899935
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPP 69 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~ 69 (346)
T Consensus 1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~ 52 (60)
T smart00363 1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECC
T ss_conf 9788999983870479999999984917989999478988989999999988