HHsearch alignment for GI: 254780608 and conserved domain: smart00363

>smart00363 S4 S4 RNA-binding domain.
Probab=98.50  E-value=2.9e-07  Score=65.86  Aligned_cols=51  Identities=24%  Similarity=0.389  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEEC
Q ss_conf             66899999876788989999999849903887884-5112117998899935
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPP   69 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~   69 (346)
T Consensus         1 ~RLD~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~   52 (60)
T smart00363        1 RRLDKFLARLGLAPSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRG   52 (60)
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECC
T ss_conf             9788999983870479999999984917989999478988989999999988