HHsearch alignment of GI: 254780608 and MMDB domain: 1dm9_A_
>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}
Probab=99.86 E-value=1.4e-23 Score=168.36 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=101.9
Q ss_pred EECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98411368668999998767889899999998499038878845112117998899935655422233222234554334
Q gi|254780608|r 11 VVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNL 90 (346)
Q Consensus 11 ~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (346)
+|+++++|||||+||++..+++||+.+++||++|+|+|||++++++++|+.||.|.+.............. .
T Consensus 1 iv~~~~~g~RLDk~L~~~~~~~sR~~a~~li~~G~V~VNG~~~~~s~~v~~gD~i~i~~~~~~~~~~~~~~--------~ 72 (133)
T 1dm9_A 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAI--------T 72 (133)
T ss_dssp ----CTTCCBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCTTCBCCTTCEEEEEETTEEEEEEECEE--------E
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEECCCCCEECCCCEEEEEECCEEEEEEEEEE--------E
T ss_conf 99887764629999987867168999999998691888999734585615999899987998658999987--------6
Q ss_pred CCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 322234543078617856884176531122357853323320110111110013335445342224046212310
Q gi|254780608|r 91 TKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRA 165 (346)
Q Consensus 91 ~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~ 165 (346)
..........++|||++.+++|||+|+.+||.. ...++++|||||+.|||.|+++++.-
T Consensus 73 ~~~~~~~~~~~~~ed~~~~v~~kp~~~~~~~~~----------------~~~r~~~vgRLDk~~t~~ll~l~~dg 131 (133)
T 1dm9_A 73 EQRRPASEAALLYEETAESVEKREKMALARKLN----------------ALTMPHPDRRPDKKERRDLLRFKHGD 131 (133)
T ss_dssp SCCCCHHHHGGGEEECHHHHHHHHHHHHHHHHH----------------HTC-----------------------
T ss_pred ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC----------------CCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 225673035666323688711345777766522----------------45578899786859999999875589