HHsearch alignment of GI: 254780608 and MMDB domain: 1k8w_A_1-79_225-253
>1k8w_A (A:1-79,A:225-253) TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli}
Probab=92.08 E-value=0.068 Score=31.61 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=37.5
Q ss_pred EECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 6178568841765311223578533233201101111100133354453422240462123101
Q gi|254780608|r 103 YEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAA 166 (346)
Q Consensus 103 yED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a 166 (346)
++-+.|++||||.|+.+|. +...+....+ ..+.+-..-||-..||||+++-.+.+
T Consensus 22 ~~~~Gil~idKP~G~TS~~-------vV~~vkk~l~--~kKVGH~GTLDP~AtGvLiv~iG~aT 76 (108)
T 1k8w_A 22 MDINGVLLLDKPQGMSSND-------ALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGEAT 76 (108)
T ss_dssp CCCCEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH
T ss_conf 8853699984799899899-------9999999858--99687686579746135999988888