HHsearch alignment of GI: 254780608 and MMDB domain: 1ksk_A_1-58

>1ksk_A (A:1-58) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=98.58  E-value=8.2e-08  Score=68.91  Aligned_cols=51  Identities=18%  Similarity=0.254  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf             6866899999876788989999999849903887884-511211799889993
Q gi|254780608|r   17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP   68 (346)
Q Consensus        17 ~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~   68 (346)
                      ..+|||+||++.. ..||++++++|+.|.|+|||+++ ++++.|..||.|.+.
T Consensus         2 ~~~RLDk~L~~~~-~~SR~~a~~lI~~g~V~Vng~~v~~~~~~v~~~d~I~i~   53 (58)
T 1ksk_A            2 SHXRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD   53 (58)
T ss_dssp             CCEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred             CCCHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCCEECCCCEEEEE
T ss_conf             8400999998778-968999999998892999999946688580786769972