HHsearch alignment of GI: 254780608 and MMDB domain: 1r3e_A_1-57_190-224
>1r3e_A (A:1-57,A:190-224) TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima}
Probab=92.05 E-value=0.071 Score=31.47 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=38.0
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf 8568841765311223578533233201101111100133354453422240462123101222102333
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR 175 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~ 175 (346)
+.|+.+|||.|+.+|- +...+....+ ..+.+-..-||-..||+|+++-++.+ .|.++.+
T Consensus 3 nGil~idKP~G~TS~~-------vV~~iKk~l~--~kKVGH~GTLDP~AtGvLii~iG~aT--KL~~~~~ 61 (92)
T 1r3e_A 3 HGILVAYKPKGPTSHD-------VVDEVRKKLK--TRKVGHGGTLDPFACGVLIIGVNQGT--RILELVR 61 (92)
T ss_dssp CEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHEEEE
T ss_conf 5599996699899899-------9999999868--88787785679746446999988675--3323898