HHsearch alignment of GI: 254780608 and MMDB domain: 1v9k_A_
>1v9k_A (A:) Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=368.29 Aligned_cols=219 Identities=33% Similarity=0.518 Sum_probs=179.4
Q ss_pred CEEEEECCCEEEECCCCCCEEECCCCCCCC-CCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCC
Q ss_conf 307861785688417653112235785332-3320110111110013335445342224046212310122210233332
Q gi|254780608|r 99 SILLYEDSKIYVFNKPAGISVQGGSGIAYH-IDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMR 177 (346)
Q Consensus 99 ~~IiyED~~livinKPaGl~vhp~~g~~~~-~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~ 177 (346)
+.|||||++|+|||||+|++|||+.+.... +..++... ....++.+|||||++||||||+|||..+++.|+.+|+++
T Consensus 2 ~~Iiyed~~~~vvnKP~G~~~~~~~~~~~~tl~~~l~~~--~~~~~~~~vhRLD~~TSGlll~ak~~~~a~~l~~~~~~~ 79 (228)
T 1v9k_A 2 DVIXYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR--PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 79 (228)
T ss_dssp CCEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHS--TTCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHC--CCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 989996899999999999863899899536999999867--787653166404643221367523579999999998740
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHH
Q ss_conf 21112000134565410000000122346554321113355555553034301013432024420457861237899999
Q gi|254780608|r 178 RIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRV 257 (346)
Q Consensus 178 ~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRv 257 (346)
.+.|+|+|+|.|.+....+.+..++......... .......+.+.|.++|.+....+ .+++++++|.|||+||||+
T Consensus 80 ~v~K~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~tGR~HQIR~ 155 (228)
T 1v9k_A 80 GXQKDYLALVRGQWQSHVKSVQAPLLKNILQSGE---RIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRV 155 (228)
T ss_dssp CSEEEEEEEEESCCCTTCCEECCCEEEEECTTSC---EEEEECTTSBCCCEEEEEEEECS-SEEEEEEEESSCCTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCE---EEEECCCCCCCCCEEECHHHHCC-CCEEEEEEECCCCHHHHHH
T ss_conf 3454321034686422357522330000110101---55520788842215500555358-7379999947573578888
Q ss_pred HHHHCCCCEECCCCCCCCCCCHH---CCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHHC
Q ss_conf 99963980004644466522100---013446241311000437588964-9998399789999999808
Q gi|254780608|r 258 HALHMGCPIVGDHKYCANFKGNF---TSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSLG 323 (346)
Q Consensus 258 hl~~~g~PivGD~~Yg~~~~~~~---~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l~ 323 (346)
||+++||||+||.+||....... ......+++|||++|+|+||.+++ +.|+||+|++|.++|+.|.
T Consensus 156 h~a~~g~PIvgD~~Y~~~~~~~~~~~~~~~~~~~~Lha~~l~f~~p~~~~~~~~~ap~P~~~~~~l~~~~ 225 (228)
T 1v9k_A 156 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVXRIEAPXDEGLKRCLQKXR 225 (228)
T ss_dssp HHHHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 8885497213577413000002333202686237887150392879999889999178699999999987