HHsearch alignment of GI: 254780608 and MMDB domain: 1vio_A_1-57

>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}

Probab=98.53  E-value=1.3e-07  Score=67.60  Aligned_cols=50  Identities=16%  Similarity=0.298  Sum_probs=46.1

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf             866899999876788989999999849903887884-511211799889993
Q gi|254780608|r   18 NMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP   68 (346)
Q Consensus        18 g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~   68 (346)
                      .+|||+||++.. ..||++++++|++|+|+|||+++ ++++.|..||.|.+.
T Consensus         2 ~~RLDk~L~~~~-~~SR~~a~~lI~~g~V~Vng~~i~~~~~~v~~~d~i~v~   52 (57)
T 1vio_A            2 SLRLDKFIAENV-GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFE   52 (57)
T ss_dssp             CEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEET
T ss_pred             CHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEEE
T ss_conf             558999999877-858999999998797899999915489586887878762