HHsearch alignment of GI: 254780608 and MMDB domain: 2aus_C_31-245
>2aus_C (C:31-245) Pseudouridine synthase; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3hjw_A* 3hjy_A
Probab=96.38 E-value=0.0025 Score=40.65 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=50.5
Q ss_pred CCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 78568841765311223578533233201101111100133354453422240462123101222102333322111200
Q gi|254780608|r 105 DSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYW 184 (346)
Q Consensus 105 D~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~ 184 (346)
-+.+|++|||.|+.+|- +...+..... ..+.+-.+-||-..||+++++-.+.+ +.+ ..| ..-.|+|.
T Consensus 15 ~~G~l~~~KP~g~tS~~-------vv~~ik~~~~--~~kvGh~GTLDp~atGvl~i~vg~aT-kl~-~~~--~~~~K~Y~ 81 (215)
T 2aus_C 15 QYGVINLDKPPGPTSHE-------VVAWIKRILN--LEKAGHGGTLDPKVSGVLPVALERAT-RVV-QAL--LPAGKEYV 81 (215)
T ss_dssp HTEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG-GGG-GGG--TTCCEEEE
T ss_pred CCCEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCCEEEEECHHH-HHH-HHH--CCCCCEEE
T ss_conf 78389995799899999-------9999998718--34257898789865034767873899-899-997--45885999
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 0134565410000000
Q gi|254780608|r 185 SLVWGIPKNKKECIAN 200 (346)
Q Consensus 185 Aiv~G~~~~~~~~i~~ 200 (346)
|.+..-...+..-++.
T Consensus 82 ~~~~~g~~t~t~d~~~ 97 (215)
T 2aus_C 82 ALMHLHGDVPEDKIRA 97 (215)
T ss_dssp EEEEESSCCCHHHHHH
T ss_pred EEEEECCCCCCCHHHE
T ss_conf 9988723444440013