HHsearch alignment of GI: 254780608 and MMDB domain: 2gml_A_
>2gml_A (A:) Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=100.00 E-value=0 Score=329.60 Aligned_cols=205 Identities=12% Similarity=-0.003 Sum_probs=161.7
Q ss_pred CCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC
Q ss_conf 54307861785688417653112235785332332011011111001333544534222404621231012221023333
Q gi|254780608|r 97 LKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRM 176 (346)
Q Consensus 97 ~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~ 176 (346)
.+..|||||+++||||||+|++|||+.....++...+.. ..++++|||||++||||||||++.+++..+.. ..
T Consensus 5 ~~~~ii~ed~~~ivvnKP~G~~~~~~~~~~~~~~~~l~~-----~~~~~~vhRLD~~TSGlll~a~~~~~~~~~~~--~~ 77 (237)
T 2gml_A 5 HHHHHHGSDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-----SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AG 77 (237)
T ss_dssp --------CCCEEEEEECTTCBCCSSSSCSSBHHHHSCC-----SSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HH
T ss_pred CCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHCCC-----CCCEEECCCCCCCCCCCEEEECCHHHHHHHHH--HC
T ss_conf 555556852399999799938972289999974421576-----45611412468888885898416688888765--31
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 22111200013456541000000012234655432111335555555303430101343202442045786123789999
Q gi|254780608|r 177 RRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR 256 (346)
Q Consensus 177 ~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIR 256 (346)
+.+.|+|+|+|.|.+....+.+..+.... .+.+.+...... .++++++++|.|||+||||
T Consensus 78 ~~i~K~Y~a~v~G~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~~v~~~~~tGR~HQIR 137 (237)
T 2gml_A 78 NDHEKEYLVTVDKPITEEFIRGXSAGVPI-------------------LGTVTKKCKVKK-EAPFVFRITLVQGLNRQIR 137 (237)
T ss_dssp HHSCEEEEEEESSCCCHHHHHHHSSCCEE-------------------TTEECCCCEEEE-EETTEEEEEECCCSTTHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHCCCEE-------------------CCEEEECHHHCC-CCCEEEEEEEECCCCHHHH
T ss_conf 35514887785267999999999759887-------------------775742000035-6654999998168861999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCH-----------------HCCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHH
Q ss_conf 99996398000464446652210-----------------001344624131100043758896-499983997899999
Q gi|254780608|r 257 VHALHMGCPIVGDHKYCANFKGN-----------------FTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKT 318 (346)
Q Consensus 257 vhl~~~g~PivGD~~Yg~~~~~~-----------------~~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~ 318 (346)
+||+++||||+||.+||...... .......+++|||++++|+||.++ ++.|+||+|++|.++
T Consensus 138 ~h~~~~G~pI~gD~~y~~~~~~~~~l~~g~~~~l~~~e~~~~~~~~~~~~Lha~~l~f~~p~t~e~~~~~~p~p~~~~~~ 217 (237)
T 2gml_A 138 RXCEHFGYEVKKLERTRIXNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKXEKTAEKG 217 (237)
T ss_dssp HHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHTTSTTCC------------------------------
T ss_pred HHHHHCCCEEEEEEEEEECCEEECCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998699766699999888880897997838999999999998763345666886667887666678877777777888
Q ss_pred HHHHCCCCCC
Q ss_conf 9980898752
Q gi|254780608|r 319 WDSLGFKYDR 328 (346)
Q Consensus 319 l~~l~~~~d~ 328 (346)
++.|++.-+.
T Consensus 218 ~~~l~~~~~~ 227 (237)
T 2gml_A 218 GRPASNGKRF 227 (237)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
T ss_conf 8988899898