HHsearch alignment of GI: 254780608 and MMDB domain: 2gml_A_

>2gml_A (A:) Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=100.00  E-value=0  Score=329.60  Aligned_cols=205  Identities=12%  Similarity=-0.003  Sum_probs=161.7

Q ss_pred             CCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC
Q ss_conf             54307861785688417653112235785332332011011111001333544534222404621231012221023333
Q gi|254780608|r   97 LKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRM  176 (346)
Q Consensus        97 ~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~  176 (346)
                      .+..|||||+++||||||+|++|||+.....++...+..     ..++++|||||++||||||||++.+++..+..  ..
T Consensus         5 ~~~~ii~ed~~~ivvnKP~G~~~~~~~~~~~~~~~~l~~-----~~~~~~vhRLD~~TSGlll~a~~~~~~~~~~~--~~   77 (237)
T 2gml_A            5 HHHHHHGSDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-----SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AG   77 (237)
T ss_dssp             --------CCCEEEEEECTTCBCCSSSSCSSBHHHHSCC-----SSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HH
T ss_pred             CCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHCCC-----CCCEEECCCCCCCCCCCEEEECCHHHHHHHHH--HC
T ss_conf             555556852399999799938972289999974421576-----45611412468888885898416688888765--31


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf             22111200013456541000000012234655432111335555555303430101343202442045786123789999
Q gi|254780608|r  177 RRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR  256 (346)
Q Consensus       177 ~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIR  256 (346)
                      +.+.|+|+|+|.|.+....+.+..+....                   .+.+.+...... .++++++++|.|||+||||
T Consensus        78 ~~i~K~Y~a~v~G~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~~v~~~~~tGR~HQIR  137 (237)
T 2gml_A           78 NDHEKEYLVTVDKPITEEFIRGXSAGVPI-------------------LGTVTKKCKVKK-EAPFVFRITLVQGLNRQIR  137 (237)
T ss_dssp             HHSCEEEEEEESSCCCHHHHHHHSSCCEE-------------------TTEECCCCEEEE-EETTEEEEEECCCSTTHHH
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHCCCEE-------------------CCEEEECHHHCC-CCCEEEEEEEECCCCHHHH
T ss_conf             35514887785267999999999759887-------------------775742000035-6654999998168861999


Q ss_pred             HHHHHCCCCEECCCCCCCCCCCH-----------------HCCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHH
Q ss_conf             99996398000464446652210-----------------001344624131100043758896-499983997899999
Q gi|254780608|r  257 VHALHMGCPIVGDHKYCANFKGN-----------------FTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKT  318 (346)
Q Consensus       257 vhl~~~g~PivGD~~Yg~~~~~~-----------------~~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~  318 (346)
                      +||+++||||+||.+||......                 .......+++|||++++|+||.++ ++.|+||+|++|.++
T Consensus       138 ~h~~~~G~pI~gD~~y~~~~~~~~~l~~g~~~~l~~~e~~~~~~~~~~~~Lha~~l~f~~p~t~e~~~~~~p~p~~~~~~  217 (237)
T 2gml_A          138 RXCEHFGYEVKKLERTRIXNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKXEKTAEKG  217 (237)
T ss_dssp             HHHHHTTCCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHTTSTTCC------------------------------
T ss_pred             HHHHHCCCEEEEEEEEEECCEEECCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99998699766699999888880897997838999999999998763345666886667887666678877777777888


Q ss_pred             HHHHCCCCCC
Q ss_conf             9980898752
Q gi|254780608|r  319 WDSLGFKYDR  328 (346)
Q Consensus       319 l~~l~~~~d~  328 (346)
                      ++.|++.-+.
T Consensus       218 ~~~l~~~~~~  227 (237)
T 2gml_A          218 GRPASNGKRF  227 (237)
T ss_dssp             ----------
T ss_pred             CCCCCCCCCC
T ss_conf             8988899898