HHsearch alignment of GI: 254780608 and MMDB domain: 3kbg_A_1-81

>3kbg_A (A:1-81) 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=90.41  E-value=0.42  Score=26.60  Aligned_cols=53  Identities=21%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             HCCCCHHHHHHHHCCCC-CHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEE
Q ss_conf             36866899999876788-9899999998499038878845-11211799889993
Q gi|254780608|r   16 EENMRLDRWFKNHYPHI-NFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIP   68 (346)
Q Consensus        16 ~~g~RLd~~L~~~~~~~-sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~   68 (346)
                      ..++.|--||.+.++.. +...+++.+.+|.|.|||++.+ ..+.+-.-|+|+|+
T Consensus         5 ~~siPL~i~LRd~Lk~A~t~rEak~Il~~~~V~VDGkvr~D~~~pvG~mDVIsi~   59 (81)
T 3kbg_A            5 DQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFXDVIEIN   59 (81)
T ss_dssp             CSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEET
T ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEC
T ss_conf             1256543786446452265899999986793898999962389988706799979