HHsearch results for GI: 254780608 and protein with PDBid: 1c05_A

>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C

Probab=97.73  E-value=5.7e-05  Score=50.05  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECC
Q ss_conf             668999998767889899999998499038878845-1121179988999356
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPV   70 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~   70 (346)
                      +|||..+-+.==..|+.++++++..|.|.|||+++. |++.|+.||.|.+.+.
T Consensus        51 ~RLDnvvyR~gfa~t~~~ARQlv~Hghi~VNgk~v~ipS~~vk~gD~I~~~~k  103 (159)
T 1c05_A           51 SRLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVREK  103 (159)
T ss_dssp             HBHHHHHHHTTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECGG
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHCCEEECCEEEEECCEECCCCCEEEECCC
T ss_conf             86567720477527999999999803707024798525677489989873210