HHsearch results for GI: 254780608 and protein with PDBid: 1dm9_A

>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A

Probab=98.61  E-value=8e-08  Score=68.03  Aligned_cols=55  Identities=15%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             HHHCCCCHHHHHHHH-CCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEEC
Q ss_conf             113686689999987-67889899999998499038878845112117998899935
Q gi|254780608|r   14 NDEENMRLDRWFKNH-YPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPP   69 (346)
Q Consensus        14 ~~~~g~RLd~~L~~~-~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~   69 (346)
                      +..++||||+||... | .-||+.++++|+.|.|+|||+++|+++.|+.||+|.|..
T Consensus         4 ~~~~~mRlD~~L~~~r~-~KtRs~A~~~i~~G~V~vNg~~~K~s~~v~~gD~i~i~~   59 (133)
T 1dm9_A            4 KPAVEVRLDKWLWAARF-YKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ   59 (133)
T ss_dssp             -CTTCCBHHHHHHHTTS-SSSHHHHHHHHHTTCEEETTEECCTTCBCCTTCEEEEEE
T ss_pred             CCCCCEEHHHHHHHHHH-HHHHHHHHHHHHCCCEEECCEECCCCCCCCCCCEEEEEE
T ss_conf             88886863899987162-504999999998694798996467666688999899986