HHsearch results for GI: 254780608 and protein with PDBid: 1ksk_A
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=3.6e-43 Score=290.86 Aligned_cols=206 Identities=16% Similarity=0.213 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68668999998767889899999998499038878845-11211799889993565542223322223455433432223
Q gi|254780608|r 17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD 95 (346)
Q Consensus 17 ~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
.+||||+||++.+ ..||++++++|++|.|+|||++++ ++++|.+||.|.+...
T Consensus 2 ~~iRLdk~Ls~~~-~~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~------------------------- 55 (234)
T 1ksk_A 2 SHMRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN------------------------- 55 (234)
T ss_dssp CCEEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE-------------------------
T ss_pred CCCHHHHHHHHCC-CCCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC-------------------------
T ss_conf 7522999998778-96899999999889599999995678858177666885031-------------------------
Q ss_pred CCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf 45430786178568841765311223578533233201101111100133354453422240462123101222102333
Q gi|254780608|r 96 FLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR 175 (346)
Q Consensus 96 ~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~ 175 (346)
....+||..++++|||+|++||++......+..++ ......++++|||||++||||||+|++..++..+..++
T Consensus 56 ---~i~~~~~~~~ivlnKP~G~~~~~~~~~~~~~~~~l---~~~~~~~~~~V~RLD~dTsGLll~t~d~~~~~~l~~~~- 128 (234)
T 1ksk_A 56 ---PLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFL---DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPR- 128 (234)
T ss_dssp ---EECCCCCCCEEEEEECTTCBSSSSCSSSCBGGGGC---CCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTT-
T ss_pred ---EEEECCCCEEEEEECCCCCCCCCCCCCCCEEEECC---CCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHH-
T ss_conf ---45204574799998999867666455431443013---45445507650225888865487505867888775552-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 32211120001345654100000001223465543211133555555530343010134320244204578612378999
Q gi|254780608|r 176 MRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQL 255 (346)
Q Consensus 176 ~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQI 255 (346)
+.+.|+|+|.|.|.+..... .. + ... ...+++.+.|.+..++..+ .++++|.+.|||+|||
T Consensus 129 -~~i~k~Y~~~v~g~~~~~~~--~~-l----------~~~---v~~~~~~~~~~~~~~~~~~--~~~l~i~l~tGR~hQI 189 (234)
T 1ksk_A 129 -HHCEKTYLVTLESPVADDTA--EQ-F----------AKG---VQLHNEKDLTKPAVLEVIT--PTQVRLTISEGRYHQV 189 (234)
T ss_dssp -SCCCEEEEEEESSCCCTTHH--HH-H----------HHC---CCCTTCSSCCCCCEEEEEE--TTEEEEEESCCCTTHH
T ss_pred -CCCCEEEEECCCCCCCHHHH--HH-H----------HEE---EEECCCEEEEEEEEEECCC--CCEEEEEEECCCHHHH
T ss_conf -28857996055788877675--45-4----------215---6757955456567852159--9589999824973899
Q ss_pred HHHHHHCCCCEECCCC--CCC
Q ss_conf 9999963980004644--466
Q gi|254780608|r 256 RVHALHMGCPIVGDHK--YCA 274 (346)
Q Consensus 256 Rvhl~~~g~PivGD~~--Yg~ 274 (346)
|+||+++||||++..+ ||+
T Consensus 190 R~h~~~~G~pV~~L~Ri~~G~ 210 (234)
T 1ksk_A 190 KRMFAAVGNHVVELHRERIGG 210 (234)
T ss_dssp HHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEEEEECC
T ss_conf 999998699798999999876