HHsearch results for GI: 254780608 and protein with PDBid: 1r3e_A

>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.84  E-value=0.00043  Score=44.51  Aligned_cols=70  Identities=20%  Similarity=0.376  Sum_probs=47.4

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
                      +.|++||||+|+.+|-       +...+.....  ..+.+-.+.||--.||||+++-+..+  .+...+..  ..|+|.|
T Consensus         3 nG~l~v~KP~g~tS~~-------vv~~vr~~l~--~kkvGH~GTLDP~AtGvL~i~~g~aT--k~~~~~~~--~~K~Y~~   69 (309)
T 1r3e_A            3 HGILVAYKPKGPTSHD-------VVDEVRKKLK--TRKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKD--LKKVYWV   69 (309)
T ss_dssp             CEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT--SCEEEEE
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHH--CCCEEEE
T ss_conf             6699997799899899-------9999999868--89787685679746137999988776--24477612--2755479


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
                      .+.
T Consensus        70 ~~~   72 (309)
T 1r3e_A           70 KMR   72 (309)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999