HHsearch results for GI: 254780608 and protein with PDBid: 1r3e_A
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=96.84 E-value=0.00043 Score=44.51 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=47.4
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
+.|++||||+|+.+|- +...+..... ..+.+-.+.||--.||||+++-+..+ .+...+.. ..|+|.|
T Consensus 3 nG~l~v~KP~g~tS~~-------vv~~vr~~l~--~kkvGH~GTLDP~AtGvL~i~~g~aT--k~~~~~~~--~~K~Y~~ 69 (309)
T 1r3e_A 3 HGILVAYKPKGPTSHD-------VVDEVRKKLK--TRKVGHGGTLDPFACGVLIIGVNQGT--RILEFYKD--LKKVYWV 69 (309)
T ss_dssp CEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGTT--SCEEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHH--CCCEEEE
T ss_conf 6699997799899899-------9999999868--89787685679746137999988776--24477612--2755479
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 70 ~~~ 72 (309)
T 1r3e_A 70 KMR 72 (309)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999