HHsearch results for GI: 254780608 and protein with PDBid: 1sgv_A
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2
Probab=96.69 E-value=0.00071 Score=43.12 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=47.5
Q ss_pred CCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 78568841765311223578533233201101111100133354453422240462123101222102333322111200
Q gi|254780608|r 105 DSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYW 184 (346)
Q Consensus 105 D~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~ 184 (346)
+..|++||||.|+.+|. +...+..... ..+.+-.++||--.||+|+++-+..+ .+...|.+ -.|+|.
T Consensus 5 ~~G~l~i~KP~G~TS~~-------~v~~vk~~~~--~~KvGH~GTLDP~AsGvL~i~vG~aT--Kl~~~~~~--~~K~Y~ 71 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSHD-------VVGRCRRIFA--TRRVGHAGTLDPMATGVLVIGIERAT--KILGLLTA--APKSYA 71 (316)
T ss_dssp CSEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTT--SCEEEE
T ss_pred CCEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHC--CCEEEE
T ss_conf 98899997799999899-------9999999858--78456487789756334999978788--47799851--864899
Q ss_pred CCCC
Q ss_conf 0134
Q gi|254780608|r 185 SLVW 188 (346)
Q Consensus 185 Aiv~ 188 (346)
|.+.
T Consensus 72 ~~~~ 75 (316)
T 1sgv_A 72 ATIR 75 (316)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999