HHsearch results for GI: 254780608 and protein with PDBid: 1v9f_A
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=0 Score=540.00 Aligned_cols=299 Identities=25% Similarity=0.384 Sum_probs=239.9
Q ss_pred EEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 999841136866899999876788989999999849903887884-5112117998899935655422233222234554
Q gi|254780608|r 9 YVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPVINALNHIIKEQKILDSS 87 (346)
Q Consensus 9 ~~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~ 87 (346)
.++|+++++|+|||+||++.||++||++++++|++|.|+|||+++ +++++|..||.|.+........
T Consensus 7 t~tV~~~~~G~RLD~~L~~~~~~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~~~~~~~------------ 74 (325)
T 1v9f_A 7 TATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEA------------ 74 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCC------------
T ss_conf 99989775886799999986687799999999986998999999378541656999999826766654------------
Q ss_pred CCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCCCCC-CCCCHHHCCCC--CCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 33432223454307861785688417653112235785332-33201101111--1001333544534222404621231
Q gi|254780608|r 88 VNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYH-IDGFLKSWVDS--KGQKPRLTHRLDQETSGILVVARTR 164 (346)
Q Consensus 88 ~~~~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~-~~~~l~~~~~~--~~~~~~lVHRLDr~TSGlll~AK~~ 164 (346)
.......++.|||||++++|||||+|++|||+++.... +.+.+..+... ....+++|||||++||||||||||.
T Consensus 75 ---~~~~~~~~~~ilyed~~~ivvnKP~Gl~~~p~~~~~~~tl~~~~~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~ 151 (325)
T 1v9f_A 75 ---RFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTV 151 (325)
T ss_dssp ----CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSH
T ss_pred ---CCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC
T ss_conf ---46755688607996088999989998725899998887499999986343137765216657898874269974000
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEE
Q ss_conf 01222102333322111200013456541000000012234655432111335555555303430101343202442045
Q gi|254780608|r 165 AAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLE 244 (346)
Q Consensus 165 ~a~~~l~~~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~ 244 (346)
.+++.|+++|+++.|.|+|+|+|.|.++. .+.+..++........ . ....++|+.|+|+|++++..+ .+|||+
T Consensus 152 ~~~~~l~~~f~~~~v~K~Y~A~v~G~~~~-~~~~~~~~~~~~~~~~-~----~~v~~~gk~a~T~~~~~~~~~-~~slv~ 224 (325)
T 1v9f_A 152 PAQTRLVESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKRT-H----MAVHPMGKPAVTHYRIMEHFR-VHTRLR 224 (325)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTT-C----EEECTTSBCCEEEEEEEEECS-SEEEEE
T ss_pred HHHHHHHHHHHHCEEEEEEEEEEECCCCC-CCCEECCCCCCCCCCC-E----EEECCCCEEEEEEEEEEEECC-CCEEEE
T ss_conf 57899988764070205899999764276-6505044323777762-7----997889803589999744238-844689
Q ss_pred EEECHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHH--------CCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHH
Q ss_conf 786123789999999963980004644466522100--------013446241311000437588964-99983997899
Q gi|254780608|r 245 MQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNF--------TSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHM 315 (346)
Q Consensus 245 ~~l~TGR~HQIRvhl~~~g~PivGD~~Yg~~~~~~~--------~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f 315 (346)
|+|+||||||||+||+++||||+||.+||+...... .....+||+|||++|+|+||.+++ ++|+||||+||
T Consensus 225 ~~~~TGRtHQIRvHla~lG~PIlGD~~YG~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~~aplP~df 304 (325)
T 1v9f_A 225 LRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDM 304 (325)
T ss_dssp EEESCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCCHHH
T ss_pred EEECCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHH
T ss_conf 99788886799999998599375861348765565432056676650586412534806966699998899991797999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99999808987520
Q gi|254780608|r 316 VKTWDSLGFKYDRN 329 (346)
Q Consensus 316 ~~~l~~l~~~~d~~ 329 (346)
+++|+.|.+.++++
T Consensus 305 ~~~l~~L~~~~~~~ 318 (325)
T 1v9f_A 305 VELIEVMRADFEEH 318 (325)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999974156554