HHsearch results for GI: 254780608 and protein with PDBid: 1v9k_A

>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00  E-value=0  Score=433.52  Aligned_cols=218  Identities=33%  Similarity=0.522  Sum_probs=182.8

Q ss_pred             EEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCC
Q ss_conf             07861785688417653112235785332332011011111001333544534222404621231012221023333221
Q gi|254780608|r  100 ILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRI  179 (346)
Q Consensus       100 ~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v  179 (346)
                      .||||||+|+|||||+||+|||+++...++...+..... ....+++|||||++||||||||||+.+++.|+++|+++.|
T Consensus         3 ~IlyED~~ilvvnKP~gl~vh~~~~~~~~~~~~l~~~~~-~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~r~v   81 (228)
T 1v9k_A            3 VIMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM   81 (228)
T ss_dssp             CEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHST-TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred             EEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHCCE
T ss_conf             999978999999989998648998996269999998677-8875666730798762338986568889999999973833


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             11200013456541000000012234655432111335555555303430101343202442045786123789999999
Q gi|254780608|r  180 QKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHA  259 (346)
Q Consensus       180 ~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl  259 (346)
                      .|+|+|+|.|.+....+++..++...........   .....+|+.|.|+|++++..+ .+|||+|+|+||||||||+||
T Consensus        82 ~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gk~a~T~~~~~~~~~-~~slv~~~~~TGRtHQIRvHl  157 (228)
T 1v9k_A           82 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI---VRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHT  157 (228)
T ss_dssp             EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEE---EEECTTSBCCCEEEEEEEECS-SEEEEEEEESSCCTTHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCEEECCEECCCCCCCEEE---EEECCCCCCCCEEEEEEEECC-CCEEEEEEECCCCHHHHHHHH
T ss_conf             3687002278632235604202011333340378---885799822326765420348-867999995868389999998


Q ss_pred             HHCCCCEECCCCCCCCCCCH---HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHH
Q ss_conf             96398000464446652210---0013446241311000437588964-999839978999999980
Q gi|254780608|r  260 LHMGCPIVGDHKYCANFKGN---FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSL  322 (346)
Q Consensus       260 ~~~g~PivGD~~Yg~~~~~~---~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l  322 (346)
                      +++||||+||.+||+.....   .......|++|||++|+|+||.+++ +.|+||+|+||+++|+.|
T Consensus       158 a~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~rl~LHa~~L~f~hP~tg~~~~~~aplP~~f~~~l~~L  224 (228)
T 1v9k_A          158 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKM  224 (228)
T ss_dssp             HHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred             HHCCCEEECCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             7479748367665860018556763259852788626169788999988999806859999999999