HHsearch results for GI: 254780608 and protein with PDBid: 1v9k_A
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=0 Score=433.52 Aligned_cols=218 Identities=33% Similarity=0.522 Sum_probs=182.8
Q ss_pred EEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCC
Q ss_conf 07861785688417653112235785332332011011111001333544534222404621231012221023333221
Q gi|254780608|r 100 ILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRI 179 (346)
Q Consensus 100 ~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v 179 (346)
.||||||+|+|||||+||+|||+++...++...+..... ....+++|||||++||||||||||+.+++.|+++|+++.|
T Consensus 3 ~IlyED~~ilvvnKP~gl~vh~~~~~~~~~~~~l~~~~~-~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~~f~~r~v 81 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 81 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHST-TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred EEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEECCCCCCCEEEEECCHHHHHHHHHHHHHCCE
T ss_conf 999978999999989998648998996269999998677-8875666730798762338986568889999999973833
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf 11200013456541000000012234655432111335555555303430101343202442045786123789999999
Q gi|254780608|r 180 QKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHA 259 (346)
Q Consensus 180 ~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl 259 (346)
.|+|+|+|.|.+....+++..++........... .....+|+.|.|+|++++..+ .+|||+|+|+||||||||+||
T Consensus 82 ~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gk~a~T~~~~~~~~~-~~slv~~~~~TGRtHQIRvHl 157 (228)
T 1v9k_A 82 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI---VRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHT 157 (228)
T ss_dssp EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEE---EEECTTSBCCCEEEEEEEECS-SEEEEEEEESSCCTTHHHHHH
T ss_pred EEEEECCCCCCCCCCCCEEECCEECCCCCCCEEE---EEECCCCCCCCEEEEEEEECC-CCEEEEEEECCCCHHHHHHHH
T ss_conf 3687002278632235604202011333340378---885799822326765420348-867999995868389999998
Q ss_pred HHCCCCEECCCCCCCCCCCH---HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHH
Q ss_conf 96398000464446652210---0013446241311000437588964-999839978999999980
Q gi|254780608|r 260 LHMGCPIVGDHKYCANFKGN---FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSL 322 (346)
Q Consensus 260 ~~~g~PivGD~~Yg~~~~~~---~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l 322 (346)
+++||||+||.+||+..... .......|++|||++|+|+||.+++ +.|+||+|+||+++|+.|
T Consensus 158 a~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~rl~LHa~~L~f~hP~tg~~~~~~aplP~~f~~~l~~L 224 (228)
T 1v9k_A 158 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKM 224 (228)
T ss_dssp HHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred HHCCCEEECCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 7479748367665860018556763259852788626169788999988999806859999999999