HHsearch results for GI: 254780608 and protein with PDBid: 2apo_A

>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=95.67  E-value=0.0045  Score=38.07  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             EECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf             61785688417653112235785332332011011111001333544534222404621231012221023333221112
Q gi|254780608|r  103 YEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKI  182 (346)
Q Consensus       103 yED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~  182 (346)
                      |-...+|.||||+|+.+|-       +...+....+  ..+.+-..-||--.||||++|-++.+ +.+ ..+.  .-.|+
T Consensus        63 ~~~~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kK~GH~GTLDP~AtGvL~i~ig~aT-Kl~-~~~~--~~~K~  129 (357)
T 2apo_A           63 LIKYGVVVVDKPRGPTSHE-------VSTWVKKILN--LDKAGHGGTLDPKVTGVLPVALERAT-KTI-PMWH--IPPKE  129 (357)
T ss_dssp             HHHTEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG-GGG-GGTT--SSCEE
T ss_pred             HHCCCEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCEEEEEEECHHH-CCC-HHHC--CCCEE
T ss_conf             8559689997899999899-------9999999848--88257786789767206999988564-306-4543--79809


Q ss_pred             CCCCCC
Q ss_conf             000134
Q gi|254780608|r  183 YWSLVW  188 (346)
Q Consensus       183 Y~Aiv~  188 (346)
                      |.|++.
T Consensus       130 Y~~~~~  135 (357)
T 2apo_A          130 YVCLMH  135 (357)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999999