HHsearch results for GI: 254780608 and protein with PDBid: 2apo_A
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=95.67 E-value=0.0045 Score=38.07 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=50.0
Q ss_pred EECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf 61785688417653112235785332332011011111001333544534222404621231012221023333221112
Q gi|254780608|r 103 YEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKI 182 (346)
Q Consensus 103 yED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~ 182 (346)
|-...+|.||||+|+.+|- +...+....+ ..+.+-..-||--.||||++|-++.+ +.+ ..+. .-.|+
T Consensus 63 ~~~~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kK~GH~GTLDP~AtGvL~i~ig~aT-Kl~-~~~~--~~~K~ 129 (357)
T 2apo_A 63 LIKYGVVVVDKPRGPTSHE-------VSTWVKKILN--LDKAGHGGTLDPKVTGVLPVALERAT-KTI-PMWH--IPPKE 129 (357)
T ss_dssp HHHTEEEEEEECSSSCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG-GGG-GGTT--SSCEE
T ss_pred HHCCCEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCEEEEEEECHHH-CCC-HHHC--CCCEE
T ss_conf 8559689997899999899-------9999999848--88257786789767206999988564-306-4543--79809
Q ss_pred CCCCCC
Q ss_conf 000134
Q gi|254780608|r 183 YWSLVW 188 (346)
Q Consensus 183 Y~Aiv~ 188 (346)
|.|++.
T Consensus 130 Y~~~~~ 135 (357)
T 2apo_A 130 YVCLMH 135 (357)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999999