HHsearch results for GI: 254780608 and protein with PDBid: 2gml_A
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.83 E-value=2.2e-21 Score=153.57 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=93.3
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68841765311223578533233201101111100133354453422240462123101222102333322111200013
Q gi|254780608|r 108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLV 187 (346)
Q Consensus 108 livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv 187 (346)
+|++|||+|++|+...+...++.+++. ...+..+|||||++|||||||+.+...+..|.. ....|.|+|++.|
T Consensus 16 yillNKP~G~v~t~~d~~r~tv~dll~-----~~~rl~~VGRLD~dtsGLLLlTnDg~l~~~L~~--p~~~i~K~Y~v~v 88 (237)
T 2gml_A 16 LIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLVTV 88 (237)
T ss_dssp EEEEEECTTCBCCSSSSCSSBHHHHSC-----CSSCCEEESCCCTTCEEEEEEESCHHHHHHHHH--HHHHSCEEEEEEE
T ss_pred EEEEECCCCEEECCCCCCCCCCHHHCC-----CCCCEEECCCCCCCCCCCEEEECCHHHHHHHHC--CCCCCEEEEEEEE
T ss_conf 999989997696558999997165336-----645531404678888774899468779898628--9876516998885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf 45654100000001223465543211133555555530343010134320244204578612378999999996398000
Q gi|254780608|r 188 WGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIV 267 (346)
Q Consensus 188 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Piv 267 (346)
.|.+.++. +.. +.+ . +.. .++..... . + . ....+.+++.+.+||+||||.||+++||||+
T Consensus 89 ~g~i~~~~--l~~-l~~-G------v~l-----~~~~~~~~--~-~-~-~~~~~~~~i~l~eGrnrqIRrm~~~lG~~V~ 148 (237)
T 2gml_A 89 DKPITEEF--IRG-MSA-G------VPI-----LGTVTKKC--K-V-K-KEAPFVFRITLVQGLNRQIRRMCEHFGYEVK 148 (237)
T ss_dssp SSCCCHHH--HHH-HSS-C------CEE-----TTEECCCC--E-E-E-EEETTEEEEEECCCSTTHHHHHHHHTTCCEE
T ss_pred CCCCCHHH--HHH-HHC-C------CEE-----CCEEEECC--C-C-C-CCCCEEEEEEECCCCHHHHHHHHHHCCCEEE
T ss_conf 36899999--999-982-9------853-----12250010--0-1-3-5676499999667877999999998799785
Q ss_pred CCC
Q ss_conf 464
Q gi|254780608|r 268 GDH 270 (346)
Q Consensus 268 GD~ 270 (346)
.=.
T Consensus 149 ~L~ 151 (237)
T 2gml_A 149 KLE 151 (237)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 889