HHsearch results for GI: 254780608 and protein with PDBid: 3dh3_A
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.98 E-value=7.4e-33 Score=225.85 Aligned_cols=202 Identities=17% Similarity=0.241 Sum_probs=143.7
Q ss_pred HCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36866899999876788989999999849903887884511211799889993565542223322223455433432223
Q gi|254780608|r 16 EENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD 95 (346)
Q Consensus 16 ~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
+..+|||+||+.. ...||+.+++||++|+|+|||++++.+++|..||.|.|..... ..
T Consensus 4 ~~~iRL~K~La~~-g~~SRr~ae~lI~~GrV~VNGkvv~~~~kV~~~D~I~vdg~~~------------~~--------- 61 (290)
T 3dh3_A 4 DSSVRLNKYISES-GICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLI------------EP--------- 61 (290)
T ss_dssp CCCEEHHHHHHTT-TSSCHHHHHHHHHTTCEEETTEECCTTCEECTTCCEEETTEEE------------CC---------
T ss_pred CCCCCHHHHHHHC-CCCHHHHHHHHHHCCEEEECCEECCCCCCCCCCCEEEECCEEC------------CC---------
T ss_conf 8872599999877-8842999999997796998999957988979999899999984------------44---------
Q ss_pred CCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf 45430786178568841765311223578533233201101111100133354453422240462123101222102333
Q gi|254780608|r 96 FLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR 175 (346)
Q Consensus 96 ~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~ 175 (346)
.-+++..+++.|||.|+.|+...+....+..+.. ...++.+|||||++|||||||+++...+..|. +.
T Consensus 62 -----~~~~~~~~i~~~kp~~~~~~~~~~~~~~~~~l~~-----~~~rl~~VGRLD~dTsGLLLlTnDg~l~~~L~--~p 129 (290)
T 3dh3_A 62 -----REAEDLVLIALNKPVGIVSTTEDGERDNIVDFVN-----HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL--RA 129 (290)
T ss_dssp -----CCGGGCCEEEEEECTTCBCCCCSSCTTBHHHHHT-----CSSCCEESSCCCTTCEEEEEEESCTTHHHHHH--CG
T ss_pred -----CCCCCEEEEEECCCCCEECCCCCCCCCCHHHHCC-----CCCCEEECCCCCCCCCCEEEEECCCHHHHHHH--CC
T ss_conf -----3565259997079874233545677775444113-----55523561346888875499955958999986--02
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 32211120001345654100000001223465543211133555555530343010134320244204578612378999
Q gi|254780608|r 176 MRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQL 255 (346)
Q Consensus 176 ~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQI 255 (346)
...+.|+|++.|.|.+.... +.. +.. . +. ..++...... . . ....+++++.+.|||+|||
T Consensus 130 ~~~i~k~Y~v~v~g~i~~~~--l~~-l~~-G---------v~--~~~~~~~~~~---~-~-~~~~~~l~i~l~eGr~rqI 189 (290)
T 3dh3_A 130 GNDHEKEYLVTVDKPITEEF--IRG-MSA-G---------VP--ILGTVTKKCK---V-K-KEAPFVFRITLVQGLNRQI 189 (290)
T ss_dssp GGCCCEEEEEEESSCCCHHH--HHH-HHT-C---------CB--CSSSBCCCCE---E-E-ECSSSEEEEEESCCCTTHH
T ss_pred CCCCCCEEEEEECCCCCHHH--HHH-HHC-C---------CE--EEEEEEEEEE---E-E-ECCCCEEEEEECCCCHHHH
T ss_conf 22676268999936799999--999-973-8---------75--3115732124---5-5-2367158999258867999
Q ss_pred HHHHHHCCCCEECCCC
Q ss_conf 9999963980004644
Q gi|254780608|r 256 RVHALHMGCPIVGDHK 271 (346)
Q Consensus 256 Rvhl~~~g~PivGD~~ 271 (346)
|+||+++||||+.=..
T Consensus 190 Rr~~~~iG~~V~~L~R 205 (290)
T 3dh3_A 190 RRMCEHFGYEVKKLER 205 (290)
T ss_dssp HHHHHHTTCCEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
T ss_conf 9999986997979899