HHSEARCH alignment of GI: 254780608 and SCOP domain: d1kska4

Alignment
>d1kska4 d.265.1.3 (A:60-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=3.6e-23  Score=163.28  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             EEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68841765311223578533233201101111100133354453422240462123101222102333322111200013
Q gi|254780608|r  108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLV  187 (346)
Q Consensus       108 livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv  187 (346)
                      ++++|||+|+.|+........+.+.+   ......+..+|||||++|||+|||+.+.+.++.|....  ..+.|+|+|.|
T Consensus         3 yi~lNKP~G~l~s~~~~~~~~~~~~l---~~~~~~~l~~vgRLD~~tsGLlL~tndg~~~~~l~~~~--~~i~k~Y~v~v   77 (172)
T d1kska4           3 YFMLNKPQGYVCSTDDPDHPTVLYFL---DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPR--HHCEKTYLVTL   77 (172)
T ss_dssp             EEEEEECTTCBSSSSCSSSCBGGGGC---CCTTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTT--SCCCEEEEEEE
T ss_pred             EEEEECCCCEEECCCCCCCCCEEEEC---CCCCCCCEEEEECCCCCCCCCEEEECCCCEEEEECCCC--CCCCEEEEEEE
T ss_conf             99998999789797398999378865---75236767896137860036399904564154311223--24627999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEE
Q ss_conf             45654100000001223465543211133555555530343010134320244204578612378999999996398000
Q gi|254780608|r  188 WGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIV  267 (346)
Q Consensus       188 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Piv  267 (346)
                      .|.+.....  . .+.+          .+   .-++..+.+.+..++... . +.+++.+.|||+||||+||+++|+||+
T Consensus        78 ~~~i~~~~~--~-~l~~----------gv---~i~~~~~~~~~~~v~~~~-~-~~l~i~l~~Gr~~qIR~~~~~lg~~V~  139 (172)
T d1kska4          78 ESPVADDTA--E-QFAK----------GV---QLHNEKDLTKPAVLEVIT-P-TQVRLTISEGRYHQVKRMFAAVGNHVV  139 (172)
T ss_dssp             SSCCCTTHH--H-HHHH----------CC---CCTTCSSCCCCCEEEEEE-T-TEEEEEESCCCTTHHHHHHHHTTCCEE
T ss_pred             ECCCCHHHH--H-HHHC----------CE---EECCCCCCCCCEEEEECC-C-CEEEEEEECCCCHHHHHHHHHCCCEEE
T ss_conf             226897898--8-8636----------55---776851111525885146-7-599999944853899999997598894


Q ss_pred             C--CCCCCC
Q ss_conf             4--644466
Q gi|254780608|r  268 G--DHKYCA  274 (346)
Q Consensus       268 G--D~~Yg~  274 (346)
                      .  -..||+
T Consensus       140 ~L~Rv~~G~  148 (172)
T d1kska4         140 ELHRERIGG  148 (172)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
T ss_conf             999999836


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal small subunit pseudouridine 516 synthase RsuA
species: Escherichia coli [TaxId: 562]