HHSEARCH alignment of GI: 254780608 and SCOP domain: d1p9ka_

Alignment

Probab=98.14  E-value=3.4e-07  Score=62.57  Aligned_cols=66  Identities=18%  Similarity=0.144  Sum_probs=53.7

Q ss_pred             CCCCCEEEEEECHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf             7668304999841136866899999876788989999999849903887884-511211799889993
Q gi|254780608|r    2 SLMTYVQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP   68 (346)
Q Consensus         2 ~~M~~~~~~~V~~~~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~   68 (346)
                      .-|+.+..|... +...+|||+||+..-=--||++++++|+.|+|+|||+++ +++++|..||.|.+.
T Consensus         5 ~~~~~m~~~~~~-~~~~irL~k~L~~~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vd   71 (79)
T d1p9ka_           5 HRMSNMATFSLG-KHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA   71 (79)
T ss_dssp             CSSCCCCEEECC-SCSCCCHHHHHHHHTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred             CCCCCCCEEECC-CCCCEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEC
T ss_conf             123587207869-9982889999987788468999999999398603998936456349999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: YbcJ-like
domain: Hypothetical protein YbcJ
species: Escherichia coli [TaxId: 562]