HHSEARCH alignment of GI: 254780608 and SCOP domain: d1v9ka_

Alignment
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=433.16  Aligned_cols=218  Identities=33%  Similarity=0.522  Sum_probs=183.3

Q ss_pred             EEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCC
Q ss_conf             07861785688417653112235785332332011011111001333544534222404621231012221023333221
Q gi|254780608|r  100 ILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRI  179 (346)
Q Consensus       100 ~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v  179 (346)
                      .||||||+|||||||+||+|||+++...++.+.+..+.. ....+++|||||++||||||||||+++++.|+++|+++.+
T Consensus         2 ~IlyeD~~ilvvnKP~gl~~h~~~~~~~~~~~~l~~~~~-~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~~f~~~~v   80 (227)
T d1v9ka_           2 VIMYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM   80 (227)
T ss_dssp             CEEEECSSEEEEEECTTSCSSCCSSSBCCHHHHHHHHST-TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHTTCS
T ss_pred             EEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCC-CCCCCCEEEECCCEEEEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf             799967999999999998648998995359999998677-8765315632242020046651556999999999860566


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHH
Q ss_conf             11200013456541000000012234655432111335555555303430101343202442045786123789999999
Q gi|254780608|r  180 QKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHA  259 (346)
Q Consensus       180 ~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl  259 (346)
                      .|+|+|+|+|.+....+.++.++..........+   .....+++.|.|+|++++..+ .+|||+|+|.||||||||+||
T Consensus        81 ~K~Y~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gk~a~t~~~~l~~~~-~~slv~~~~~TGRtHQIRvHl  156 (227)
T d1v9ka_          81 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI---VRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHT  156 (227)
T ss_dssp             EEEEEEEEESCCCTTCCEECCCEEEEECTTSCEE---EEECTTSBCCCEEEEEEEECS-SEEEEEEEESSCCTTHHHHHH
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE---EECCCCCCCCCEEEHHHHHCC-CCEEEEEEECCCCHHHHHHHH
T ss_conf             4201112357631236752233001332110255---520789801205620455258-737999994657347887777


Q ss_pred             HHCCCCEECCCCCCCCCCCH---HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHH
Q ss_conf             96398000464446652210---0013446241311000437588964-999839978999999980
Q gi|254780608|r  260 LHMGCPIVGDHKYCANFKGN---FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSL  322 (346)
Q Consensus       260 ~~~g~PivGD~~Yg~~~~~~---~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l  322 (346)
                      +++||||+||.+||+.....   .......|++|||++|+|.||.+++ ++|+||+|++|+++|++|
T Consensus       157 a~lG~PIvGD~~Yg~~~~~~~~~~~~~~~~rl~LHa~~L~f~hP~t~~~~~~~aplP~~f~~~l~~L  223 (227)
T d1v9ka_         157 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKM  223 (227)
T ss_dssp             HHTTCCBTTCTTTSCHHHHHHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred             HHCCCEECCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCEEECCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf             6459533467603131124300001468643788715029188999988999926919999999998


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal large subunit pseudouridine synthase C, RluC
species: Escherichia coli [TaxId: 562]